Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   EG64_RS05845 Genome accession   NZ_CP007606
Coordinates   1217762..1218307 (-) Length   181 a.a.
NCBI ID   WP_038418025.1    Uniprot ID   -
Organism   Helicobacter pylori strain BM013B     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1212762..1223307
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EG64_RS05825 (EG64_06100) - 1213879..1214109 (+) 231 WP_000468330.1 YdcH family protein -
  EG64_RS05835 (EG64_06115) babB 1214875..1216999 (-) 2125 Protein_1108 Hop family adhesin BabB -
  EG64_RS05840 (EG64_06120) rpsR 1217482..1217739 (-) 258 WP_000440196.1 30S ribosomal protein S18 -
  EG64_RS05845 (EG64_06125) ssb 1217762..1218307 (-) 546 WP_038418025.1 single-stranded DNA-binding protein Machinery gene
  EG64_RS05850 (EG64_06130) rpsF 1218317..1218745 (-) 429 WP_038418027.1 30S ribosomal protein S6 -
  EG64_RS05855 (EG64_06135) holA 1218900..1219922 (-) 1023 WP_038418028.1 DNA polymerase III subunit delta -
  EG64_RS05860 (EG64_06140) - 1219912..1221846 (-) 1935 WP_038418029.1 RNB domain-containing ribonuclease -
  EG64_RS05865 (EG64_06145) - 1221846..1222637 (-) 792 WP_038418030.1 shikimate dehydrogenase -
  EG64_RS05870 (EG64_06150) - 1222645..1223232 (-) 588 WP_038418031.1 SH3 domain-containing protein -

Sequence

Protein


Download         Length: 181 a.a.        Molecular weight: 20192.48 Da        Isoelectric Point: 6.4882

>NTDB_id=106523 EG64_RS05845 WP_038418025.1 1217762..1218307(-) (ssb) [Helicobacter pylori strain BM013B]
MFNKVIMVGRLTRNVELKYLPSGSAAATIGLATSRRFKKQDGTLGEEVCFIDARLFGRTAEIANQYLSKGSSVLIEGRLT
YESWMDQTGKKNSRHTITADSLQFMDKKSDNPQANAMQDSMTHEGFNNAYPANHNAPSQDPFNQAPSYAQNAHAKENLQA
QPSKYQNSVPEINIDEEEIPF

Nucleotide


Download         Length: 546 bp        

>NTDB_id=106523 EG64_RS05845 WP_038418025.1 1217762..1218307(-) (ssb) [Helicobacter pylori strain BM013B]
ATGTTTAATAAAGTGATTATGGTAGGGCGTTTGACCAGGAATGTGGAGTTGAAATATTTGCCTAGCGGCTCGGCTGCGGC
TACAATAGGTTTAGCCACAAGCAGGCGTTTTAAAAAACAAGACGGCACGCTAGGCGAAGAGGTGTGCTTTATAGATGCGC
GTTTGTTTGGGCGAACGGCTGAAATCGCTAACCAGTATTTGAGCAAGGGTTCAAGCGTTTTGATAGAAGGGCGTTTGACT
TATGAGAGTTGGATGGATCAAACGGGTAAAAAAAATTCCCGCCACACTATCACAGCAGACTCGTTGCAATTTATGGATAA
AAAATCAGACAATCCCCAAGCGAACGCCATGCAAGATAGCATGACGCATGAGGGTTTCAACAACGCTTATCCCGCTAATC
ATAACGCTCCCAGCCAAGATCCTTTTAACCAAGCCCCAAGTTATGCGCAAAACGCTCACGCTAAAGAGAATTTACAAGCA
CAGCCGTCCAAGTATCAAAACAGCGTGCCTGAAATCAATATTGATGAAGAAGAAATCCCCTTTTAA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(2-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

35.106

100

0.365

Multiple sequence alignment