Detailed information    

insolico Bioinformatically predicted

Overview

Name   treR   Type   Regulator
Locus tag   AABA16_RS08610 Genome accession   NZ_AP028610
Coordinates   1686914..1687624 (+) Length   236 a.a.
NCBI ID   WP_000760673.1    Uniprot ID   A0A062WVH4
Organism   Streptococcus pneumoniae strain Sep5     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1681914..1692624
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AABA16_RS08595 (TKY124516_16990) - 1682455..1682703 (-) 249 WP_000364990.1 YneF family protein -
  AABA16_RS08600 (TKY124516_17000) treC 1682959..1684584 (-) 1626 WP_000171217.1 alpha,alpha-phosphotrehalase -
  AABA16_RS08605 (TKY124516_17010) treP 1684762..1686729 (-) 1968 WP_000514331.1 PTS system trehalose-specific EIIBC component -
  AABA16_RS08610 (TKY124516_17020) treR 1686914..1687624 (+) 711 WP_000760673.1 trehalose operon repressor Regulator
  AABA16_RS08615 (TKY124516_17030) - 1687657..1688460 (-) 804 WP_000202630.1 ATP-binding cassette domain-containing protein -
  AABA16_RS08620 (TKY124516_17040) - 1688473..1689366 (-) 894 WP_001012092.1 ABC transporter permease -
  AABA16_RS08625 (TKY124516_17050) - 1689378..1690315 (-) 938 Protein_1707 ABC transporter substrate-binding protein -
  AABA16_RS08630 (TKY124516_17060) amiF 1690805..1691731 (-) 927 WP_001291293.1 ATP-binding cassette domain-containing protein Regulator

Sequence

Protein


Download         Length: 236 a.a.        Molecular weight: 27607.78 Da        Isoelectric Point: 8.9698

>NTDB_id=106522 AABA16_RS08610 WP_000760673.1 1686914..1687624(+) (treR) [Streptococcus pneumoniae strain Sep5]
MKKYQQLFKQIQETIQNETYAVGDFLPSEHDLMEQYQVSRDTVRKALSLLQEEGLIKKIRGQGSQVVKEETVNFPVSNLT
SYQELVKELGLRSKTNVVSLDKIIIDKKSSLITGFPEFRMVWKVVRQRVVDDLVSVLDTDYLDMELIPNLTRQIAEQSIY
SYIENGLKLLIDYAQKEITIDHSSDRDKILMDIGKDPYVVSIKSKVYLQDGRQFQFTESRHKLEKFRFVDFAKRKK

Nucleotide


Download         Length: 711 bp        

>NTDB_id=106522 AABA16_RS08610 WP_000760673.1 1686914..1687624(+) (treR) [Streptococcus pneumoniae strain Sep5]
ATGAAGAAATACCAACAATTATTTAAGCAAATCCAAGAAACCATTCAAAACGAGACTTACGCTGTCGGAGATTTCCTTCC
TAGCGAGCACGACCTTATGGAGCAATATCAAGTGAGTCGTGATACCGTCCGAAAGGCCCTGTCTCTCCTCCAAGAGGAAG
GATTGATCAAAAAGATAAGAGGGCAAGGTTCTCAAGTCGTCAAAGAAGAAACCGTCAATTTCCCTGTATCCAACCTAACC
AGCTACCAAGAACTAGTTAAAGAACTTGGACTGCGCTCTAAAACCAACGTGGTCAGTCTGGACAAGATTATTATTGATAA
AAAATCCTCACTGATAACCGGTTTCCCAGAGTTTCGGATGGTTTGGAAGGTGGTCCGCCAGCGTGTGGTGGATGATCTGG
TATCCGTTCTGGATACGGACTATCTGGATATGGAACTAATTCCAAATCTCACTCGCCAAATTGCTGAGCAGTCTATCTAT
TCTTATATAGAAAATGGCCTCAAACTCCTTATTGATTATGCTCAGAAGGAAATCACCATTGACCACTCAAGCGACCGAGA
CAAGATTCTCATGGACATTGGCAAAGACCCTTATGTCGTTTCGATTAAATCAAAAGTCTATCTCCAAGACGGACGCCAAT
TTCAGTTTACCGAAAGTCGCCATAAGTTAGAGAAATTTAGATTTGTAGATTTTGCAAAACGCAAGAAATAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, gntR family (GntR)

(3-66)

UTRA domain (UTRA)

(89-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A062WVH4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  treR Streptococcus mutans UA159

59.322

100

0.593

Multiple sequence alignment