Detailed information    

insolico Bioinformatically predicted

Overview

Name   waaF   Type   Regulator
Locus tag   EG64_RS05515 Genome accession   NZ_CP007606
Coordinates   1157010..1158053 (+) Length   347 a.a.
NCBI ID   WP_038417971.1    Uniprot ID   -
Organism   Helicobacter pylori strain BM013B     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 1152010..1163053
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EG64_RS05495 (EG64_05765) - 1152197..1152940 (+) 744 WP_038417967.1 carbonic anhydrase -
  EG64_RS05500 (EG64_05770) - 1153175..1154182 (-) 1008 WP_038417968.1 DUF874 family protein -
  EG64_RS05505 (EG64_05775) asd 1154593..1155633 (-) 1041 WP_038417969.1 aspartate-semialdehyde dehydrogenase -
  EG64_RS05510 (EG64_05780) hisS 1155620..1156948 (-) 1329 WP_038417970.1 histidine--tRNA ligase -
  EG64_RS05515 (EG64_05785) waaF 1157010..1158053 (+) 1044 WP_038417971.1 lipopolysaccharide heptosyltransferase II Regulator
  EG64_RS05520 (EG64_05790) - 1158249..1158737 (-) 489 WP_000744157.1 hypothetical protein -
  EG64_RS05525 (EG64_05795) - 1158956..1159945 (+) 990 WP_038417973.1 aldo/keto reductase -
  EG64_RS05530 (EG64_05805) fusA 1160507..1162585 (-) 2079 WP_000101819.1 elongation factor G -

Sequence

Protein


Download         Length: 347 a.a.        Molecular weight: 39153.80 Da        Isoelectric Point: 9.6682

>NTDB_id=106522 EG64_RS05515 WP_038417971.1 1157010..1158053(+) (waaF) [Helicobacter pylori strain BM013B]
MSVNAPKRMRILLRLPNWLGDGVMASSLFYTLKHHYPNAHFILVGPQITCELFKKDEKIEAVFIDNTKKSFFRLLATHKL
AQKIGRCDIAIALNNHFYSAFLLYATKTPVRIGFAQFFRSLFLSHAIAPAPKEYHQVEKYCFLFSQFLEKELDKKSVLPL
KLAFNLPTHTPNTPKKIGFNPSASYGSAKRWPASYYAKAAAALLEKGHEIYFFGAKEDAIVSEEILKSVKSLLKNPLLFH
NAYNLCGKTSIEELIEHIAVLDLFITNDSGPMHAAASTQTPLIALFGPTDEKETRPYKAQKAIVLNHHLSCAPCKKRVCP
LKNEKNHLCMRSITPLEVLEAAHTLLE

Nucleotide


Download         Length: 1044 bp        

>NTDB_id=106522 EG64_RS05515 WP_038417971.1 1157010..1158053(+) (waaF) [Helicobacter pylori strain BM013B]
ATGAGCGTAAATGCGCCCAAACGCATGCGTATTTTATTGCGTTTGCCTAATTGGTTAGGCGATGGGGTGATGGCAAGCTC
GCTCTTTTACACCCTTAAACACCACTACCCTAACGCGCATTTTATCTTAGTGGGCCCACAAATCACTTGCGAACTTTTCA
AAAAAGATGAAAAAATAGAAGCCGTTTTTATAGACAACACCAAAAAATCCTTTTTCAGGCTGCTAGCCACTCACAAACTC
GCTCAAAAAATAGGGCGTTGCGATATAGCGATCGCATTAAACAACCATTTTTATTCCGCTTTTTTGCTCTATGCGACAAA
AACGCCCGTTCGCATCGGTTTTGCTCAATTTTTTCGTTCTTTGTTTCTCAGCCATGCGATTGCTCCTGCCCCTAAAGAGT
ATCATCAAGTGGAAAAGTATTGCTTTTTATTTTCGCAATTTTTAGAAAAAGAATTGGATAAAAAAAGCGTTTTACCCTTA
AAACTGGCCTTTAACCTCCCCACTCACACCCCAAACACCCCTAAAAAAATCGGCTTTAACCCTAGCGCAAGCTATGGGAG
CGCTAAAAGATGGCCAGCTTCTTATTACGCCAAAGCCGCTGCTGCTTTGTTAGAAAAAGGGCATGAAATTTATTTTTTTG
GGGCTAAAGAAGACGCTATCGTTTCTGAAGAGATTTTAAAATCCGTTAAAAGCTTATTGAAAAACCCCTTATTGTTCCAT
AATGCTTACAATCTGTGCGGGAAAACAAGCATTGAAGAATTGATAGAGCACATCGCTGTTTTAGATTTATTCATCACTAA
CGATAGCGGCCCTATGCATGCGGCTGCTAGCACACAAACCCCCTTAATCGCTCTTTTTGGCCCCACTGATGAAAAAGAGA
CTCGCCCCTATAAAGCTCAAAAAGCGATCGTATTGAACCACCATTTAAGCTGTGCACCTTGCAAGAAACGAGTTTGCCCT
TTAAAGAATGAAAAAAACCATTTGTGCATGCGATCTATCACGCCCCTTGAAGTCCTAGAAGCCGCTCACACCCTTTTAGA
ATAG

Domains

Predicted by InterProScan.

Glycosyltransferase family 9 (heptosyltransferase) (Glyco_transf_9)

(78-323)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  waaF Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

37.5

99.135

0.372

Multiple sequence alignment