Detailed information    

insolico Bioinformatically predicted

Overview

Name   comQ   Type   Machinery gene
Locus tag   ACHWYH_RS09125 Genome accession   NZ_CP172084
Coordinates   1813556..1813843 (+) Length   95 a.a.
NCBI ID   WP_054249354.1    Uniprot ID   -
Organism   Haemophilus influenzae strain GA81666     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1808556..1818843
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACHWYH_RS09100 nrfE 1808618..1810525 (-) 1908 WP_112103369.1 heme lyase NrfEFG subunit NrfE -
  ACHWYH_RS09105 suhB 1810634..1811437 (-) 804 WP_105886188.1 inositol-1-monophosphatase -
  ACHWYH_RS09110 comN 1811637..1812149 (+) 513 WP_050948683.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  ACHWYH_RS09115 comO 1812149..1812865 (+) 717 WP_112103370.1 type II secretion system protein J Machinery gene
  ACHWYH_RS09120 comP 1812880..1813563 (+) 684 WP_112103371.1 DUF2572 family protein Machinery gene
  ACHWYH_RS09125 comQ 1813556..1813843 (+) 288 WP_054249354.1 DUF5374 domain-containing protein Machinery gene
  ACHWYH_RS09130 recC 1813889..1817269 (+) 3381 WP_112103372.1 exodeoxyribonuclease V subunit gamma -
  ACHWYH_RS09135 nrdR 1817324..1817773 (+) 450 WP_005648026.1 transcriptional regulator NrdR -

Sequence

Protein


Download         Length: 95 a.a.        Molecular weight: 11031.81 Da        Isoelectric Point: 9.2201

>NTDB_id=1065071 ACHWYH_RS09125 WP_054249354.1 1813556..1813843(+) (comQ) [Haemophilus influenzae strain GA81666]
MNKGMSLITLLFSLALFSVLFLVFNQWTADQRKSAVKTYQDFQATQIAENQAQRQFLGLACEQLIQQNGLTFRIRCENER
IIVRYPTSEILIKTQ

Nucleotide


Download         Length: 288 bp        

>NTDB_id=1065071 ACHWYH_RS09125 WP_054249354.1 1813556..1813843(+) (comQ) [Haemophilus influenzae strain GA81666]
ATGAATAAAGGAATGTCGCTTATTACATTGTTATTTTCTTTAGCTTTATTTAGCGTTTTATTTCTTGTTTTTAATCAATG
GACGGCAGATCAGCGAAAAAGTGCGGTAAAAACTTATCAAGATTTTCAGGCAACACAAATTGCAGAGAATCAAGCTCAAC
GCCAATTTTTAGGGTTAGCTTGTGAACAATTGATACAACAAAATGGCTTAACTTTTCGTATTCGATGTGAAAATGAACGC
ATTATTGTGCGTTATCCTACGAGTGAAATTTTGATAAAAACTCAGTAA

Domains

Predicted by InterproScan.

Family of unknown function (DUF5374) (DUF5374)

(53-92)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comQ Haemophilus influenzae Rd KW20

93.684

100

0.937

Multiple sequence alignment