Detailed information    

insolico Bioinformatically predicted

Overview

Name   comN   Type   Machinery gene
Locus tag   ACHWYH_RS09110 Genome accession   NZ_CP172084
Coordinates   1811637..1812149 (+) Length   170 a.a.
NCBI ID   WP_050948683.1    Uniprot ID   -
Organism   Haemophilus influenzae strain GA81666     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1806637..1817149
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACHWYH_RS09090 nrfF 1806949..1808091 (-) 1143 WP_112103368.1 heme lyase NrfEFG subunit NrfF -
  ACHWYH_RS09095 - 1808088..1808618 (-) 531 WP_005666027.1 DsbE family thiol:disulfide interchange protein -
  ACHWYH_RS09100 nrfE 1808618..1810525 (-) 1908 WP_112103369.1 heme lyase NrfEFG subunit NrfE -
  ACHWYH_RS09105 suhB 1810634..1811437 (-) 804 WP_105886188.1 inositol-1-monophosphatase -
  ACHWYH_RS09110 comN 1811637..1812149 (+) 513 WP_050948683.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  ACHWYH_RS09115 comO 1812149..1812865 (+) 717 WP_112103370.1 type II secretion system protein J Machinery gene
  ACHWYH_RS09120 comP 1812880..1813563 (+) 684 WP_112103371.1 DUF2572 family protein Machinery gene
  ACHWYH_RS09125 comQ 1813556..1813843 (+) 288 WP_054249354.1 DUF5374 domain-containing protein Machinery gene

Sequence

Protein


Download         Length: 170 a.a.        Molecular weight: 19822.03 Da        Isoelectric Point: 8.7271

>NTDB_id=1065068 ACHWYH_RS09110 WP_050948683.1 1811637..1812149(+) (comN) [Haemophilus influenzae strain GA81666]
MQKGMTLVELLIGLAIISIALSFAVPLWQTDSPKTILAKEQHRLYLFLRQIQARAENSSEVWFLLINRNLATQQWCLTAQ
VKNNQTCDCLNPINCPKEVYAHFYYPYFPNKTMIQSHHIYPKEITRFDGIRNTIVTRCFILQAENERTLFLFFNVGSIRL
KTNQFDSACN

Nucleotide


Download         Length: 513 bp        

>NTDB_id=1065068 ACHWYH_RS09110 WP_050948683.1 1811637..1812149(+) (comN) [Haemophilus influenzae strain GA81666]
ATGCAAAAAGGTATGACATTAGTGGAATTATTGATTGGGTTAGCCATTATCAGCATTGCGCTGAGTTTTGCCGTGCCATT
ATGGCAAACAGATTCACCTAAAACGATTTTAGCCAAAGAGCAACATCGCCTGTATTTATTTCTACGACAAATTCAGGCTC
GGGCAGAAAATTCATCGGAAGTGTGGTTTTTACTTATCAATCGTAACCTTGCGACACAACAATGGTGCTTAACGGCACAA
GTAAAAAATAACCAAACTTGTGATTGTTTAAATCCGATAAATTGCCCGAAAGAGGTTTATGCACATTTTTACTATCCTTA
TTTTCCTAATAAAACGATGATTCAAAGCCATCATATTTATCCAAAAGAAATCACGAGATTTGATGGCATTCGTAATACTA
TCGTTACTCGTTGCTTTATTTTGCAAGCAGAAAATGAACGTACGTTATTTTTATTTTTCAATGTTGGTAGTATTCGTTTA
AAAACCAATCAATTTGATAGTGCTTGTAATTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-24)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comN Haemophilus influenzae Rd KW20

98.235

100

0.982

Multiple sequence alignment