Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   EG64_RS00545 Genome accession   NZ_CP007606
Coordinates   107063..107530 (-) Length   155 a.a.
NCBI ID   WP_038417156.1    Uniprot ID   -
Organism   Helicobacter pylori strain BM013B     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 102063..112530
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EG64_RS00530 (EG64_00540) - 102471..103235 (-) 765 WP_038417153.1 glycosyltransferase family 2 protein -
  EG64_RS00535 (EG64_00545) tlpB 103266..104963 (-) 1698 WP_038417154.1 methyl-accepting chemotaxis protein TlpB -
  EG64_RS00540 (EG64_00550) - 105175..106920 (-) 1746 WP_038417155.1 bifunctional metallophosphatase/5'-nucleotidase -
  EG64_RS00545 (EG64_00555) luxS 107063..107530 (-) 468 WP_038417156.1 S-ribosylhomocysteine lyase Regulator
  EG64_RS00550 (EG64_00560) - 107568..108710 (-) 1143 WP_038417157.1 cystathionine gamma-synthase -
  EG64_RS00555 (EG64_00565) - 108731..109648 (-) 918 WP_038417158.1 O-acetylserine-dependent cystathionine beta-synthase -
  EG64_RS00560 (EG64_00570) - 109764..110339 (+) 576 WP_038417159.1 hypothetical protein -
  EG64_RS00565 (EG64_00575) dnaK 110579..112441 (-) 1863 WP_038417160.1 molecular chaperone DnaK -

Sequence

Protein


Download         Length: 155 a.a.        Molecular weight: 17682.14 Da        Isoelectric Point: 6.6039

>NTDB_id=106500 EG64_RS00545 WP_038417156.1 107063..107530(-) (luxS) [Helicobacter pylori strain BM013B]
MKTPKMNVESFNLDHTKVKAPYVRVADRKKGVNGDLIVKYDVRFKQPNQDHMDMPSLHSLEHLVAEIIRNHASYVVDWSP
MGCQTGFYLTVLNHDNYTEILEVLEKTMQDVLKAKEVPASNEKQCGWAANHTLEGAQDLARAFLDKRAEWSEVGV

Nucleotide


Download         Length: 468 bp        

>NTDB_id=106500 EG64_RS00545 WP_038417156.1 107063..107530(-) (luxS) [Helicobacter pylori strain BM013B]
ATGAAAACGCCAAAAATGAATGTAGAGAGTTTCAATTTGGATCACACCAAAGTCAAAGCCCCTTATGTGCGTGTCGCTGA
TCGCAAAAAGGGCGTTAATGGGGATTTGATTGTCAAATACGATGTGCGCTTCAAGCAGCCCAACCAAGATCACATGGACA
TGCCGAGCCTACACTCTTTAGAGCATTTAGTCGCTGAAATTATCCGCAACCATGCCAGTTATGTCGTGGATTGGTCGCCT
ATGGGTTGCCAAACGGGATTTTATCTCACGGTGTTAAACCATGACAATTACACAGAGATTTTAGAGGTTTTAGAAAAGAC
GATGCAAGATGTGTTAAAGGCTAAAGAAGTGCCTGCCAGCAATGAAAAGCAATGCGGTTGGGCGGCTAACCACACTTTAG
AGGGCGCACAGGACTTAGCACGCGCTTTTTTAGACAAACGCGCTGAATGGTCTGAAGTGGGGGTTTGA

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(7-151)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

41.135

90.968

0.374

Multiple sequence alignment