Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   ACHFS3_RS00495 Genome accession   NZ_CP172019
Coordinates   126536..128377 (+) Length   613 a.a.
NCBI ID   WP_395503966.1    Uniprot ID   -
Organism   Bifidobacterium adolescentis strain Bifi94     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 121536..133377
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACHFS3_RS00470 (ACHFS3_00470) thiF 121606..122319 (-) 714 WP_003807371.1 sulfur carrier protein ThiS adenylyltransferase ThiF -
  ACHFS3_RS00475 (ACHFS3_00475) thiS 122372..122566 (-) 195 WP_003807372.1 sulfur carrier protein ThiS -
  ACHFS3_RS00480 (ACHFS3_00480) - 123003..123971 (+) 969 WP_151905839.1 aldo/keto reductase -
  ACHFS3_RS00485 (ACHFS3_00485) - 124155..124646 (+) 492 WP_003807375.1 MarR family winged helix-turn-helix transcriptional regulator -
  ACHFS3_RS00490 (ACHFS3_00490) rcrP 124773..126524 (+) 1752 WP_021912918.1 ABC transporter ATP-binding protein Regulator
  ACHFS3_RS00495 (ACHFS3_00495) rcrQ 126536..128377 (+) 1842 WP_395503966.1 ABC transporter ATP-binding protein Regulator
  ACHFS3_RS00500 (ACHFS3_00500) - 128548..129528 (+) 981 WP_039774634.1 aldo/keto reductase family oxidoreductase -
  ACHFS3_RS00505 (ACHFS3_00505) - 129542..130594 (-) 1053 WP_055680362.1 FAD:protein FMN transferase -
  ACHFS3_RS00510 (ACHFS3_00510) - 131335..133122 (+) 1788 WP_395503967.1 FTR1 family protein -

Sequence

Protein


Download         Length: 613 a.a.        Molecular weight: 67377.11 Da        Isoelectric Point: 6.7614

>NTDB_id=1064902 ACHFS3_RS00495 WP_395503966.1 126536..128377(+) (rcrQ) [Bifidobacterium adolescentis strain Bifi94]
MPRGMGRGRGAVEKPKDFGGVMKKLVKFCSRYIPVMIFALVLGAAGTVCQIIGPDKLKDMTNEITKGLPAMVHGKPVMNS
IDMDAVSRIAWLLVALYVGYALLSYLQSWLMANVTQRTAQQLREAISQKINRLPLKYFDKVSYGDVLSRITNDVDAIGQT
LGQSVGSLITSVTLFFGALIMMFYNNVTMTLCAIGSALLGLIIMGVIMKVSQKYFTRQQVALGDVNGHVEEMYAGHTVVK
AYCGEERSIEQFEKYNNDLYVSGWKSQFLSGLMMPIMNFVGNFGYVVVCVVGAALAMDGKIEFGVIVAFMMYIRLFTQPL
SQFAQAFQNLQRCAAASERVFGFLEEPELSDETGKQALLGVGADGKPRPVRGDVEFSHVRFGYDADKTIINDFSASVKAG
QKVAIVGPTGAGKTTMVNLLMRFYEISGGTISIDGIDTKSVPRWNVHDQFSMVLQDTWVFRGTVRENIAYSKKDVTDEQI
VAACKAVGLHHYIMSLPNGYDTVLDDKASLSQGQRQLLTIARAMVEDAPILILDEATSSVDTRTEELIQKAMDALTVGRT
SFVIAHRLSTIRDADMILVMNGGDIVERGTHEELLAKGGFYADIYNSQFTLAE

Nucleotide


Download         Length: 1842 bp        

>NTDB_id=1064902 ACHFS3_RS00495 WP_395503966.1 126536..128377(+) (rcrQ) [Bifidobacterium adolescentis strain Bifi94]
ATGCCAAGAGGAATGGGACGCGGCCGTGGGGCCGTGGAAAAGCCGAAGGACTTCGGCGGAGTGATGAAGAAGCTCGTGAA
ATTCTGCAGCCGGTACATTCCGGTGATGATTTTCGCGCTGGTTCTGGGCGCTGCCGGCACGGTGTGCCAGATCATCGGCC
CGGACAAGCTCAAGGACATGACCAACGAGATCACGAAGGGTCTGCCGGCCATGGTGCACGGCAAGCCCGTCATGAATTCG
ATCGACATGGACGCGGTGTCGCGCATCGCATGGCTGCTCGTCGCGCTGTACGTCGGGTACGCGCTGCTGAGCTACCTGCA
AAGCTGGCTGATGGCCAACGTCACGCAACGCACCGCACAGCAGCTACGTGAGGCGATCAGCCAGAAAATCAATCGCCTGC
CGCTGAAATATTTCGACAAAGTCAGCTACGGCGACGTGCTGAGCCGCATCACCAACGACGTCGACGCGATCGGACAGACG
CTCGGCCAGTCGGTCGGCTCGCTCATCACATCGGTCACGCTGTTCTTCGGCGCGCTCATCATGATGTTCTACAACAACGT
GACCATGACGCTGTGCGCCATCGGCTCCGCGCTGCTCGGCCTGATCATCATGGGCGTGATCATGAAGGTGTCGCAGAAGT
ACTTCACCCGCCAGCAGGTGGCGCTCGGCGACGTCAACGGCCACGTCGAGGAAATGTACGCCGGCCACACCGTGGTCAAG
GCATACTGCGGCGAGGAACGCTCCATCGAGCAGTTCGAGAAGTACAACAACGACCTGTACGTGTCCGGCTGGAAGAGCCA
GTTCCTGTCCGGCCTGATGATGCCGATCATGAACTTCGTCGGCAACTTCGGCTACGTGGTGGTGTGCGTGGTCGGCGCGG
CGCTCGCCATGGACGGCAAGATCGAATTCGGCGTGATCGTGGCGTTCATGATGTACATCCGCCTGTTCACGCAGCCGCTG
TCCCAGTTCGCGCAGGCGTTCCAGAACCTGCAGCGCTGCGCGGCCGCATCCGAACGCGTCTTCGGCTTCCTTGAGGAACC
GGAACTGTCCGACGAAACCGGCAAGCAGGCGCTGCTGGGCGTCGGCGCGGACGGCAAGCCGCGGCCGGTGCGCGGCGACG
TGGAATTCAGCCACGTGCGCTTCGGCTACGACGCGGACAAGACCATCATCAACGACTTCTCCGCGTCCGTGAAGGCCGGC
CAGAAGGTGGCCATCGTCGGCCCGACCGGCGCCGGCAAGACCACCATGGTCAACCTGCTGATGCGCTTCTACGAGATTTC
CGGTGGCACGATTTCGATCGACGGCATCGACACCAAGTCCGTACCGCGTTGGAACGTGCACGACCAGTTCTCCATGGTGC
TGCAGGACACGTGGGTGTTCCGTGGAACAGTGCGTGAAAACATCGCGTATTCGAAGAAGGACGTCACCGACGAGCAGATC
GTGGCCGCATGCAAGGCCGTCGGCCTGCACCACTACATCATGTCGCTGCCGAACGGCTACGACACCGTGCTCGACGACAA
GGCGTCGCTTTCCCAGGGCCAGCGTCAGCTGCTGACGATCGCGCGAGCGATGGTGGAGGACGCGCCGATCCTGATCCTCG
ACGAGGCCACCTCGTCCGTCGACACCCGTACGGAAGAGCTGATTCAGAAGGCGATGGACGCGCTGACCGTGGGCCGCACG
AGCTTCGTGATCGCGCACCGCCTGTCCACCATCCGCGACGCCGACATGATCCTGGTGATGAACGGCGGCGACATCGTGGA
ACGCGGCACGCACGAGGAACTGCTCGCCAAGGGCGGCTTCTACGCCGACATCTACAACAGCCAGTTCACGCTGGCCGAGT
GA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(391-538)

ABC transporter transmembrane region (ABC_membrane)

(36-320)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

54.315

96.411

0.524

Multiple sequence alignment