Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   ACHFS3_RS00490 Genome accession   NZ_CP172019
Coordinates   124773..126524 (+) Length   583 a.a.
NCBI ID   WP_021912918.1    Uniprot ID   -
Organism   Bifidobacterium adolescentis strain Bifi94     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 119773..131524
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACHFS3_RS00465 (ACHFS3_00465) - 120535..121449 (-) 915 WP_080703707.1 thiazole synthase -
  ACHFS3_RS00470 (ACHFS3_00470) thiF 121606..122319 (-) 714 WP_003807371.1 sulfur carrier protein ThiS adenylyltransferase ThiF -
  ACHFS3_RS00475 (ACHFS3_00475) thiS 122372..122566 (-) 195 WP_003807372.1 sulfur carrier protein ThiS -
  ACHFS3_RS00480 (ACHFS3_00480) - 123003..123971 (+) 969 WP_151905839.1 aldo/keto reductase -
  ACHFS3_RS00485 (ACHFS3_00485) - 124155..124646 (+) 492 WP_003807375.1 MarR family winged helix-turn-helix transcriptional regulator -
  ACHFS3_RS00490 (ACHFS3_00490) rcrP 124773..126524 (+) 1752 WP_021912918.1 ABC transporter ATP-binding protein Regulator
  ACHFS3_RS00495 (ACHFS3_00495) rcrQ 126536..128377 (+) 1842 WP_395503966.1 ABC transporter ATP-binding protein Regulator
  ACHFS3_RS00500 (ACHFS3_00500) - 128548..129528 (+) 981 WP_039774634.1 aldo/keto reductase family oxidoreductase -
  ACHFS3_RS00505 (ACHFS3_00505) - 129542..130594 (-) 1053 WP_055680362.1 FAD:protein FMN transferase -

Sequence

Protein


Download         Length: 583 a.a.        Molecular weight: 64393.45 Da        Isoelectric Point: 5.3060

>NTDB_id=1064901 ACHFS3_RS00490 WP_021912918.1 124773..126524(+) (rcrP) [Bifidobacterium adolescentis strain Bifi94]
MLRIVRYLSKAEIGQMLVALVSIVGQIWLDLTLPDYMADITQLVETPGSEMHDIWVAGGKMLLVSLGSAACAVVTGFIAA
RVGASFSQRLRSLEFNKVESFGPAEMNRFSTASLITRSTNDITQIQMFITMGLMMIVKAPIMAVWAVCKIAGKGFDWTLA
TGIAVAILLVVIAVIMSFVMPKFKAMQRLTDNINLVARENLTGLRVVRAYNAEDYQEAKFTEANKELTETQLFTNRAMAI
MMPLMNTIMNGLMLAVYWIGAYLIDAADAVDKLTTFSNMVVFSSYSIQVIMSFLLLSMVFVLWPRADVSAQRVLEVIDTE
PMVADGTQDAGKPGEEGEIEFRNVSFAYPDSRHAMLEGVNFKAKKGQTVAFIGSTGSGKSSLINLVPRFYDATQGEVLVD
GVNVRDYKLKALRDKIGYVPQQSFLFKGTIASNVAYGDTDRDDDTVRRACDVAQATEFIDKKQKKYDSGISQGGSNVSGG
QKQRLSIARAVYRHPEILIFDDSFSALDFKTDRAVRDALEKEAKDSTKLIVAQRIGTIMNADRIIVLDDGKVVGQGTHEE
LLDTCEVYRQIAESQLSEDELKR

Nucleotide


Download         Length: 1752 bp        

>NTDB_id=1064901 ACHFS3_RS00490 WP_021912918.1 124773..126524(+) (rcrP) [Bifidobacterium adolescentis strain Bifi94]
ATGCTTCGCATCGTACGATACCTCTCCAAAGCGGAGATCGGTCAGATGCTCGTCGCGCTGGTCAGCATCGTCGGTCAGAT
TTGGCTTGACCTGACCCTGCCGGACTACATGGCCGACATCACGCAGCTCGTCGAAACCCCCGGCAGTGAAATGCACGACA
TCTGGGTGGCCGGCGGCAAAATGCTGCTCGTCTCGCTCGGCTCGGCGGCCTGCGCGGTCGTCACCGGCTTCATCGCCGCG
CGCGTGGGCGCCTCGTTCAGCCAGCGCCTGCGTTCGCTTGAATTCAACAAGGTGGAAAGCTTCGGACCGGCGGAAATGAA
CCGTTTCTCCACCGCGTCGCTCATCACCCGCTCCACGAACGACATCACGCAGATCCAGATGTTCATCACCATGGGCCTCA
TGATGATCGTCAAAGCGCCGATCATGGCCGTGTGGGCCGTGTGCAAGATCGCAGGAAAGGGCTTCGATTGGACGCTCGCA
ACCGGCATCGCCGTGGCCATCCTGCTGGTGGTCATCGCCGTGATCATGAGCTTCGTCATGCCGAAGTTCAAGGCCATGCA
GCGCCTGACCGACAACATCAACCTCGTGGCGCGCGAGAACCTCACCGGCCTGCGCGTGGTGCGCGCGTACAACGCCGAGG
ACTATCAGGAAGCCAAGTTCACCGAAGCCAACAAGGAACTCACCGAAACCCAGCTGTTCACCAACCGCGCCATGGCCATC
ATGATGCCGTTGATGAACACCATCATGAACGGCCTGATGCTCGCCGTCTACTGGATCGGCGCGTACCTCATCGACGCTGC
CGACGCCGTCGACAAGCTCACCACCTTCTCCAACATGGTGGTGTTCTCCAGCTACTCCATCCAGGTCATCATGAGCTTCC
TGCTGCTGAGCATGGTGTTCGTGCTCTGGCCGCGAGCCGACGTGTCCGCGCAGCGCGTGCTCGAAGTCATCGACACCGAG
CCGATGGTCGCCGACGGCACGCAGGACGCGGGCAAGCCGGGCGAGGAAGGCGAAATCGAATTCCGCAATGTGAGCTTCGC
CTACCCCGACTCGCGTCACGCCATGCTCGAAGGCGTCAATTTCAAGGCGAAGAAGGGTCAGACGGTGGCGTTCATCGGCT
CGACCGGCTCCGGCAAATCGTCCCTCATCAACCTCGTGCCGCGTTTCTACGACGCCACGCAAGGCGAGGTGCTCGTCGAC
GGCGTCAACGTGCGCGACTACAAGCTGAAGGCGTTGCGCGACAAGATCGGCTACGTGCCGCAGCAGTCGTTCCTGTTCAA
GGGAACGATCGCCAGCAACGTCGCGTACGGAGATACGGACCGCGACGACGACACCGTGCGCCGCGCATGCGACGTCGCGC
AGGCGACGGAATTCATCGACAAAAAGCAGAAGAAGTACGATTCTGGCATTTCGCAGGGCGGTTCCAACGTTTCGGGCGGG
CAGAAGCAGCGTCTGTCGATCGCACGCGCCGTCTACCGTCATCCGGAAATCCTGATCTTCGACGATTCCTTCTCCGCGCT
CGACTTCAAAACCGACCGTGCCGTACGTGACGCGCTCGAAAAGGAAGCGAAGGATTCCACGAAACTCATCGTCGCGCAGC
GCATCGGCACCATCATGAATGCCGACCGCATCATCGTGCTCGACGACGGCAAAGTGGTCGGCCAGGGCACGCACGAGGAA
CTGCTCGACACGTGCGAAGTGTATCGGCAGATCGCCGAATCGCAGTTGAGCGAAGACGAACTGAAGCGCTGA

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(17-293)

ABC transporter (ABC_tran)

(356-503)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

50.251

100

0.515

Multiple sequence alignment