Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   ACHMSZ_RS15495 Genome accession   NZ_CP172017
Coordinates   3184063..3184692 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain EcN_Sk     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3179063..3189692
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACHMSZ_RS15480 (ACHMSZ_15480) helD 3179305..3181359 (-) 2055 WP_001295354.1 DNA helicase IV -
  ACHMSZ_RS15485 (ACHMSZ_15485) yccF 3181482..3181928 (+) 447 WP_001261235.1 YccF domain-containing protein -
  ACHMSZ_RS15490 (ACHMSZ_15490) yccS 3181938..3184100 (+) 2163 WP_000875061.1 YccS family putative transporter -
  ACHMSZ_RS15495 (ACHMSZ_15495) sxy/tfoX 3184063..3184692 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  ACHMSZ_RS15500 (ACHMSZ_15500) sulA 3184911..3185420 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  ACHMSZ_RS15505 (ACHMSZ_15505) ompA 3185777..3186829 (+) 1053 WP_186238801.1 porin OmpA -
  ACHMSZ_RS15510 (ACHMSZ_15510) matP 3186905..3187357 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  ACHMSZ_RS15515 (ACHMSZ_15515) ycbZ 3187543..3189303 (+) 1761 WP_000156518.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=1064892 ACHMSZ_RS15495 WP_000839153.1 3184063..3184692(-) (sxy/tfoX) [Escherichia coli strain EcN_Sk]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=1064892 ACHMSZ_RS15495 WP_000839153.1 3184063..3184692(-) (sxy/tfoX) [Escherichia coli strain EcN_Sk]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1

Multiple sequence alignment