Detailed information NTG1064868

Bioinformatically predicted

Overview

• Name: rapF
• Type: Regulator
• Locus tag: ACHKST_RS17960
• Genome accession: NZ_CP172011
• Coordinates: 3604800..3605945 (+)
• Length: 381 a.a.
• NCBI ID: WP_101562519.1
• Uniprot ID: -
• Organism: Bacillus velezensis strain Bv.g1
• Function: inhibit the DNA-binding function of ComA (predicted from homology) Competence regulation

Genomic Context

Location: 3599800..3610945

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACHKST_RS17940	-	3600697..3601125 (-)	429	WP_031379330.1	DUF1934 domain-containing protein	-
ACHKST_RS17945	-	3601279..3601791 (+)	513	Protein_3474	bacteriocin biosynthesis protein AlbG	-
ACHKST_RS17950	-	3601798..3603174 (-)	1377	WP_071392425.1	YncE family protein	-
ACHKST_RS17955	-	3603214..3604569 (-)	1356	WP_101562518.1	YncE family protein	-
ACHKST_RS17960	rapF	3604800..3605945 (+)	1146	WP_101562519.1	Rap family tetratricopeptide repeat protein	Regulator
ACHKST_RS17965	-	3605929..3606048 (+)	120	WP_017418707.1	PhrC/PhrF family phosphatase-inhibitory pheromone	-
ACHKST_RS17970	speB	3606170..3607042 (-)	873	WP_003151054.1	agmatinase	-
ACHKST_RS17975	speE	3607102..3607932 (-)	831	WP_003151052.1	spermidine synthase	-
ACHKST_RS17980	-	3608132..3610204 (+)	2073	WP_101562520.1	transglycosylase domain-containing protein	-
ACHKST_RS17985	-	3610229..3610660 (-)	432	WP_031378563.1	hypothetical protein	-

Sequence

Protein

• Length: 381 a.a.
• Molecular weight: 45795.29 Da
• Isoelectric Point: 4.9327

>NTDB_id=1064868 ACHKST_RS17960 WP_101562519.1 3604800..3605945(+) (rapF) [Bacillus velezensis strain Bv.g1]
MASVLSSSAIGEKINEWYMYIRRFSIPDAEYLRREIKEELAGLEDDQDLHLYYSLMEFRHNLMLEYLEPLESQRIEEQPR
LSDLLADIDKKQARLTGRLDYYFNFFRGMYELECREYLSAIQFFKKAESKLTYVKDHIEKAEFYFKMSEVYYYMKQTYVS
MDYARQAYLIYKDEEKYNIRLTQCHSLFGANYLDVKQYDHAISHFQKAYTMAELEQQPQLMGRTLFNIALCHNNQNNKVE
AIPHLKEAIAVFEKAQMSHSLPQPYFLLTQIYFKLENIDNAYDYHKKGISICKEIDDIIYEEKFKFLEYLYMPDPRDILI
NDCLHFLESKLMYADIEELALDVAKYYYTKEEYKKASVYFLKVEEARQQIEGGVNLYEIEV

Nucleotide

• Length: 1146 bp

>NTDB_id=1064868 ACHKST_RS17960 WP_101562519.1 3604800..3605945(+) (rapF) [Bacillus velezensis strain Bv.g1]
GTGGCGAGTGTTTTATCGTCTTCAGCGATTGGAGAAAAAATCAACGAATGGTATATGTACATTCGAAGGTTCAGCATCCC
GGACGCCGAGTACTTGCGGAGAGAAATCAAAGAAGAACTTGCAGGCCTTGAAGATGACCAGGATCTTCATCTGTACTATT
CTCTCATGGAATTCCGCCACAATCTGATGCTCGAATACCTCGAACCGCTGGAATCGCAGCGGATAGAAGAACAGCCGAGA
CTATCGGATCTGCTCGCGGATATTGATAAAAAGCAGGCCCGGCTGACCGGACGGCTTGATTATTATTTTAATTTTTTCCG
GGGGATGTATGAGCTGGAATGCCGTGAATATCTTTCAGCGATTCAGTTTTTTAAGAAAGCTGAAAGCAAACTGACGTACG
TTAAAGATCATATAGAAAAAGCTGAATTTTACTTTAAAATGTCAGAAGTCTATTATTATATGAAACAAACTTATGTATCG
ATGGATTATGCGCGGCAGGCTTATTTAATTTATAAAGATGAAGAAAAATACAATATTAGATTAACCCAGTGCCATTCTTT
ATTTGGGGCTAATTATCTTGATGTAAAGCAATACGATCACGCGATTTCCCACTTTCAAAAGGCATATACGATGGCTGAAT
TGGAGCAGCAGCCGCAATTAATGGGGAGAACACTTTTTAACATCGCTTTATGCCATAATAATCAAAACAATAAAGTCGAG
GCTATTCCCCATTTAAAAGAAGCCATAGCTGTTTTTGAAAAAGCTCAAATGAGCCATTCACTTCCACAGCCCTACTTCTT
ACTTACACAGATTTATTTTAAGTTAGAAAATATAGATAACGCGTACGATTATCATAAAAAAGGTATCTCAATATGTAAGG
AAATAGATGATATAATTTACGAGGAAAAATTTAAATTTTTGGAATATTTGTATATGCCGGATCCAAGAGATATATTAATA
AACGATTGTCTGCATTTTCTTGAAAGTAAATTGATGTATGCTGATATTGAGGAATTAGCCCTTGATGTAGCTAAATATTA
TTACACAAAAGAAGAATATAAAAAAGCTTCTGTCTACTTTTTAAAAGTTGAAGAAGCCAGACAGCAGATCGAAGGAGGAG
TGAATTTATATGAAATTGAAGTATAA

Domains

Predicted by InterproScan.

• Tetratricopeptide repeat (TPR_12) (188-254)

• response regulator aspartate phosphatase H, N terminal (RapH_N) (5-65)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rapF	Bacillus subtilis subsp. subtilis str. 168	70.604	100	0.706
rapC	Bacillus subtilis subsp. subtilis str. 168	53.421	99.738	0.533