Detailed information    

insolico Bioinformatically predicted

Overview

Name   comC   Type   Machinery gene
Locus tag   ACHKST_RS13225 Genome accession   NZ_CP172011
Coordinates   2686210..2686962 (-) Length   250 a.a.
NCBI ID   WP_101562318.1    Uniprot ID   -
Organism   Bacillus velezensis strain Bv.g1     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2681210..2691962
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACHKST_RS13200 mreC 2681646..2682509 (-) 864 WP_003152649.1 rod shape-determining protein MreC -
  ACHKST_RS13205 mreB 2682540..2683553 (-) 1014 WP_003152647.1 cell shape-determining protein MreB -
  ACHKST_RS13210 radC 2683645..2684340 (-) 696 WP_007408165.1 DNA repair protein RadC -
  ACHKST_RS13215 - 2684372..2684941 (-) 570 WP_070082167.1 nucleoside triphosphate pyrophosphatase -
  ACHKST_RS13220 - 2685082..2686083 (-) 1002 WP_070082168.1 SPOR domain-containing protein -
  ACHKST_RS13225 comC 2686210..2686962 (-) 753 WP_101562318.1 A24 family peptidase Machinery gene
  ACHKST_RS13230 - 2687102..2688394 (-) 1293 WP_101562319.1 folylpolyglutamate synthase/dihydrofolate synthase family protein -
  ACHKST_RS13235 - 2688453..2691095 (-) 2643 WP_101562320.1 valine--tRNA ligase -
  ACHKST_RS13240 - 2691548..2691739 (+) 192 WP_060674742.1 hypothetical protein -

Sequence

Protein


Download         Length: 250 a.a.        Molecular weight: 27140.79 Da        Isoelectric Point: 9.2521

>NTDB_id=1064850 ACHKST_RS13225 WP_101562318.1 2686210..2686962(-) (comC) [Bacillus velezensis strain Bv.g1]
MLLILFFLGLIFGSFFYTAACRIPLRISVISPRSACSFCGLTLSWGELVPVVSYILQRGRCRNCRAKLSVMYPAAECWTA
CLFTAAGIHFGFSKELLVALLFLSLLMIVTMTDLQYMLIPDKVLLFFLPLFIAGRMFSPLDSWYAGFAGAVCGFFLLVFI
MFVSKGGIGAGDVKLFGVIGLTLGVKLVLIAFFLSVMIGAVYGMCAAARGRLGKKQPFPFAPAISAGSALSYLYGEELFS
FYIKLASGGS

Nucleotide


Download         Length: 753 bp        

>NTDB_id=1064850 ACHKST_RS13225 WP_101562318.1 2686210..2686962(-) (comC) [Bacillus velezensis strain Bv.g1]
GTGCTTTTGATTCTGTTTTTTCTCGGCTTGATTTTCGGTTCTTTTTTTTATACAGCAGCGTGCCGTATCCCGCTTCGAAT
CTCGGTTATTTCGCCGCGTTCAGCCTGCTCGTTCTGCGGCTTGACGCTCTCCTGGGGGGAGCTTGTGCCCGTCGTCTCCT
ATATTCTGCAAAGAGGCAGATGCAGAAACTGCCGTGCGAAGCTGTCGGTTATGTATCCGGCGGCGGAATGCTGGACGGCG
TGTTTATTCACGGCTGCAGGCATTCATTTCGGTTTCTCAAAAGAACTGTTAGTCGCGCTGTTATTTCTGTCTCTGCTCAT
GATTGTTACTATGACGGATCTGCAATATATGCTGATTCCTGACAAAGTTCTGCTGTTTTTTCTTCCGCTTTTCATCGCCG
GCCGTATGTTTTCTCCGCTGGATTCATGGTATGCAGGGTTTGCCGGAGCTGTTTGCGGATTTTTTCTGCTAGTTTTTATC
ATGTTTGTCAGTAAAGGAGGCATCGGCGCAGGTGATGTGAAACTGTTTGGGGTGATCGGCCTGACGCTCGGCGTGAAGCT
CGTGCTCATTGCATTCTTTCTTTCCGTTATGATCGGAGCCGTATACGGTATGTGCGCCGCAGCCCGGGGCAGGCTTGGTA
AAAAGCAGCCATTTCCGTTTGCGCCGGCCATCTCAGCCGGGAGCGCTTTGAGTTATTTATACGGTGAAGAGCTGTTTTCG
TTTTACATCAAGCTCGCTTCAGGCGGGTCTTGA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(8-90)

Type IV leader peptidase family (Peptidase_A24)

(101-204)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comC Bacillus subtilis subsp. subtilis str. 168

58.871

99.2

0.584

Multiple sequence alignment