Detailed information    

insolico Bioinformatically predicted

Overview

Name   recP/tkt   Type   Machinery gene
Locus tag   EG66_RS06435 Genome accession   NZ_CP007605
Coordinates   1310302..1312227 (+) Length   641 a.a.
NCBI ID   WP_023592464.1    Uniprot ID   -
Organism   Helicobacter pylori strain BM012B     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1305302..1317227
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EG66_RS06410 (EG66_06750) hofB 1305490..1306929 (-) 1440 WP_023592460.1 outer membrane beta-barrel protein HofB -
  EG66_RS06415 (EG66_06755) pyrB 1307235..1308158 (-) 924 WP_023592461.1 aspartate carbamoyltransferase -
  EG66_RS06420 (EG66_06760) - 1308225..1308740 (+) 516 WP_000523544.1 hypothetical protein -
  EG66_RS06425 (EG66_06765) - 1308740..1309447 (+) 708 WP_023592462.1 TlyA family RNA methyltransferase -
  EG66_RS06430 (EG66_06770) - 1309413..1310255 (+) 843 WP_023592463.1 bifunctional riboflavin kinase/FAD synthetase -
  EG66_RS06435 (EG66_06775) recP/tkt 1310302..1312227 (+) 1926 WP_023592464.1 transketolase Machinery gene
  EG66_RS06440 (EG66_06780) - 1312224..1314560 (+) 2337 WP_023592465.1 RecB family exonuclease -
  EG66_RS06445 (EG66_06785) - 1314557..1317082 (+) 2526 WP_023592466.1 DNA translocase FtsK -

Sequence

Protein


Download         Length: 641 a.a.        Molecular weight: 70479.71 Da        Isoelectric Point: 6.9827

>NTDB_id=106483 EG66_RS06435 WP_023592464.1 1310302..1312227(+) (recP/tkt) [Helicobacter pylori strain BM012B]
MRLSNADLERLKSMANALRFLCADMIDKANSGHPGVCLGLADVMVVLSLHLNLNPTNPKWLNRDRLVFSGGHASALAYSL
LHLWGFDLSLEDLKRFRQLHSKTPGHPELHHTEGIEITTGPLGQGFANAVGFSMASQYAQNLLNKQAISHKVYCLCGDGD
LQEGISYESASLAGHLNLSNLIVIYDSNQISIEGAINISFSEQVKMRFVAQNWEVLECDGHDYQAIHNALEEAKKSTKPT
LLIAHTTIGKGAVGLEGSEKTHGSPLNKEVLKQSKENAQINPDESFIISPKNKMHFEEVKVRGASLEALWEKSLSPKTKE
KIHALKNFDFNTIHYPAFKKGESLATRVSNGMILNAIAKECKGFLGGSADLAPSNNTHLKHSGDFPLGQNLHFGIREHAM
GAITNALAAYGLFLPFCATFFVFSDYLMPSMRLSALMKLKALFIFTHDSIGVGEDGATHQPIEQLSHLRALPNFYAFRPS
DAFENTACMQIALSLNAPSALILSRQNLPVLDEVSKEQVLKGAYVKHHSKDPIITLVASGSEVSLALESAKILERENIPT
QVVSTPCFDLLVEQDESYFKELFKGKVLVIEASRAIEWYRFADKIIGMDSFGSSAKGDKLFEKFGFSVENVTAQAKKLLN
A

Nucleotide


Download         Length: 1926 bp        

>NTDB_id=106483 EG66_RS06435 WP_023592464.1 1310302..1312227(+) (recP/tkt) [Helicobacter pylori strain BM012B]
ATGCGATTGAGTAACGCTGACTTAGAACGATTAAAAAGCATGGCCAATGCACTTCGCTTTTTGTGCGCGGACATGATAGA
TAAGGCTAATAGTGGGCATCCGGGCGTGTGCTTGGGATTAGCCGATGTGATGGTGGTTTTAAGCTTGCACCTAAACCTAA
ACCCCACTAACCCTAAATGGCTCAACAGAGACAGGCTGGTTTTTAGCGGAGGGCATGCGAGCGCGTTAGCGTATAGTTTG
TTGCATTTGTGGGGCTTTGATTTGAGTTTAGAAGATTTAAAGCGTTTCAGGCAATTACACTCTAAAACCCCAGGACACCC
CGAATTGCACCACACCGAAGGCATTGAGATCACAACCGGGCCTTTGGGGCAAGGTTTTGCTAACGCTGTGGGCTTTAGCA
TGGCGAGTCAATACGCTCAAAACCTTTTAAATAAACAAGCCATTTCCCATAAAGTCTATTGCTTGTGTGGGGATGGGGAT
TTGCAAGAAGGCATTAGTTATGAGAGCGCTTCTTTAGCCGGGCACCTCAACCTAAGCAATCTCATTGTGATTTATGACAG
CAACCAGATCAGCATTGAAGGCGCTATCAATATTAGTTTTAGCGAACAGGTTAAGATGCGGTTTGTGGCGCAAAATTGGG
AAGTGCTAGAATGCGATGGGCATGACTATCAAGCGATTCATAACGCTTTAGAAGAAGCCAAAAAATCCACCAAACCCACG
CTTTTAATCGCTCATACGACTATTGGTAAGGGGGCTGTTGGCTTAGAGGGGAGTGAAAAAACGCATGGCTCGCCTTTAAA
TAAAGAAGTGTTAAAACAATCCAAAGAAAACGCTCAAATCAATCCTGATGAAAGCTTTATAATCAGCCCAAAAAACAAAA
TGCATTTTGAAGAAGTGAAAGTTAGAGGTGCTAGTTTAGAAGCCTTATGGGAAAAATCCTTAAGCCCTAAAACAAAAGAA
AAAATCCATGCGTTAAAGAATTTTGATTTTAACACCATCCATTACCCAGCCTTTAAAAAAGGCGAATCTCTAGCCACGAG
AGTGAGTAACGGCATGATTTTAAACGCTATCGCTAAAGAATGCAAGGGCTTTTTGGGGGGGAGTGCGGATTTAGCCCCAT
CTAATAATACGCATTTGAAACATTCTGGCGATTTCCCTTTAGGGCAAAACCTGCATTTTGGGATCAGAGAGCATGCCATG
GGGGCTATCACCAACGCTTTAGCGGCGTATGGCTTGTTTTTGCCTTTTTGCGCGACCTTTTTTGTGTTTAGCGATTATTT
AATGCCCAGCATGCGTTTGAGCGCTTTAATGAAACTAAAAGCCCTTTTTATCTTCACGCATGACAGCATTGGCGTGGGCG
AAGATGGGGCGACGCACCAGCCCATAGAGCAATTGAGCCATTTACGCGCTTTGCCCAATTTCTATGCTTTCAGACCCAGC
GACGCTTTTGAAAACACCGCTTGCATGCAAATAGCGTTAAGTTTGAACGCTCCTAGTGCTCTTATTTTATCGCGCCAGAA
TTTGCCCGTGCTAGATGAGGTTTCTAAAGAGCAGGTTTTAAAAGGGGCGTATGTTAAACACCACTCTAAAGATCCCATTA
TCACGCTCGTTGCGAGCGGGAGCGAAGTCTCTTTGGCTTTAGAGAGCGCTAAAATTTTAGAGCGAGAAAATATCCCTACT
CAAGTGGTGAGCACGCCATGCTTTGACTTGTTGGTAGAGCAAGATGAAAGCTATTTTAAAGAACTCTTTAAAGGTAAAGT
CTTAGTCATTGAAGCGAGCCGCGCGATAGAGTGGTATCGTTTTGCGGATAAAATCATTGGCATGGATTCTTTTGGGAGTT
CGGCAAAGGGCGATAAACTCTTTGAAAAATTTGGCTTTAGCGTTGAAAACGTTACCGCTCAAGCTAAAAAGTTACTCAAC
GCATGA

Domains

Predicted by InterProScan.

Transketolase, thiamine diphosphate binding domain (Transketolase_N)

(12-321)

Transketolase, pyrimidine binding domain (Transket_pyr)

(343-509)

Transketolase, C-terminal domain (Transketolase_C)

(524-575)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recP/tkt Streptococcus pneumoniae TIGR4

41.014

100

0.417

Multiple sequence alignment