Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK   Type   Regulator
Locus tag   ACHKST_RS05440 Genome accession   NZ_CP172011
Coordinates   1037311..1037889 (+) Length   192 a.a.
NCBI ID   WP_003155179.1    Uniprot ID   G1BIW7
Organism   Bacillus velezensis strain Bv.g1     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1032311..1042889
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACHKST_RS05415 - 1032811..1033326 (-) 516 WP_369719112.1 methyl-accepting chemotaxis protein -
  ACHKST_RS05420 - 1033570..1034310 (-) 741 Protein_1004 protoglobin domain-containing protein -
  ACHKST_RS05425 - 1034226..1035749 (-) 1524 WP_101562871.1 FAD-dependent oxidoreductase -
  ACHKST_RS05430 - 1035874..1036731 (+) 858 WP_007610477.1 SDR family oxidoreductase -
  ACHKST_RS05435 - 1036762..1036995 (-) 234 WP_003155181.1 IDEAL domain-containing protein -
  ACHKST_RS05440 comK 1037311..1037889 (+) 579 WP_003155179.1 competence protein ComK Regulator
  ACHKST_RS05445 - 1038017..1038202 (+) 186 WP_072588961.1 hypothetical protein -
  ACHKST_RS05450 - 1038206..1039582 (+) 1377 WP_101562872.1 hypothetical protein -
  ACHKST_RS05455 - 1040231..1040599 (+) 369 WP_003155175.1 iron chaperone -
  ACHKST_RS05460 - 1040626..1040997 (+) 372 WP_077722024.1 iron chaperone -
  ACHKST_RS05465 - 1041131..1041841 (-) 711 WP_003155170.1 YrpD family protein -
  ACHKST_RS05470 - 1042037..1042306 (+) 270 WP_071392024.1 excalibur calcium-binding domain-containing protein -
  ACHKST_RS05475 - 1042339..1042656 (-) 318 WP_003155166.1 YbjQ family protein -

Sequence

Protein


Download         Length: 192 a.a.        Molecular weight: 22315.58 Da        Isoelectric Point: 8.1419

>NTDB_id=1064813 ACHKST_RS05440 WP_003155179.1 1037311..1037889(+) (comK) [Bacillus velezensis strain Bv.g1]
MCQKTHAPLESYEVNRSTIAVLPEEIDGKMGSKVIEKDCILYVSMKPIHIIDRSCRYFGSSYAGRKAGTYEAIKISHKPP
IMVDPSNHIFLFPTLSSARPQCGWISHVHVKDFQPTAFDDTAVTFSNGKTMELEVSYHSFENQVYRTAYLRTTFQDRMGS
HIPKRQEFMLYPKEERTRMIYDFILRELGERY

Nucleotide


Download         Length: 579 bp        

>NTDB_id=1064813 ACHKST_RS05440 WP_003155179.1 1037311..1037889(+) (comK) [Bacillus velezensis strain Bv.g1]
ATGTGCCAGAAAACACACGCACCCTTAGAAAGCTACGAAGTAAATCGTTCAACCATCGCTGTTTTGCCTGAGGAAATAGA
CGGTAAAATGGGGTCGAAGGTCATTGAAAAAGACTGCATTCTGTATGTCAGCATGAAGCCGATTCACATCATCGACAGAA
GCTGCCGCTACTTTGGCTCCAGCTATGCCGGGAGAAAAGCAGGAACATATGAAGCGATTAAAATTTCTCACAAGCCGCCG
ATTATGGTGGACCCTTCAAATCACATCTTTTTATTCCCTACACTTTCTTCTGCAAGGCCTCAATGCGGCTGGATATCTCA
TGTGCACGTTAAAGATTTTCAACCGACGGCATTTGATGACACAGCGGTCACGTTCTCAAACGGCAAAACGATGGAACTGG
AAGTATCCTATCATTCTTTTGAAAATCAGGTTTACAGAACCGCCTATCTCAGAACCACTTTTCAGGACAGGATGGGCAGT
CATATCCCGAAGCGGCAGGAATTCATGCTGTATCCGAAAGAAGAGCGGACAAGAATGATCTACGACTTTATTTTGCGGGA
GCTGGGGGAGAGATATTAG

Domains

Predicted by InterproScan.

ComK protein (ComK)

(10-158)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G1BIW7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK Bacillus subtilis subsp. subtilis str. 168

82.292

100

0.823

Multiple sequence alignment