Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   ACHMXE_RS40080 Genome accession   NZ_CP172004
Coordinates   5811675..5813264 (-) Length   529 a.a.
NCBI ID   WP_209545985.1    Uniprot ID   -
Organism   Variovorax sp. UC122_21     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5806675..5818264
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACHMXE_RS40055 (ACHMXE_40055) - 5807522..5808133 (+) 612 WP_395349116.1 cytochrome b -
  ACHMXE_RS40060 (ACHMXE_40060) - 5808130..5808714 (+) 585 WP_395349117.1 YceI family protein -
  ACHMXE_RS40065 (ACHMXE_40065) - 5808747..5809388 (+) 642 WP_395349118.1 YceI family protein -
  ACHMXE_RS40070 (ACHMXE_40070) - 5809411..5810055 (+) 645 WP_395349119.1 LysE family translocator -
  ACHMXE_RS40075 (ACHMXE_40075) - 5810065..5811664 (-) 1600 Protein_5523 phospholipase D family protein -
  ACHMXE_RS40080 (ACHMXE_40080) rpoN/rpoN1 5811675..5813264 (-) 1590 WP_209545985.1 RNA polymerase factor sigma-54 Machinery gene
  ACHMXE_RS40085 (ACHMXE_40085) lptB 5813295..5814089 (-) 795 WP_395349120.1 LPS export ABC transporter ATP-binding protein -
  ACHMXE_RS40090 (ACHMXE_40090) lptA 5814086..5814799 (-) 714 WP_209545989.1 lipopolysaccharide transport periplasmic protein LptA -
  ACHMXE_RS40095 (ACHMXE_40095) - 5815112..5815759 (-) 648 WP_203204061.1 thiol:disulfide interchange protein DsbA/DsbL -
  ACHMXE_RS40100 (ACHMXE_40100) - 5815945..5816706 (-) 762 WP_203204060.1 SPOR domain-containing protein -

Sequence

Protein


Download         Length: 529 a.a.        Molecular weight: 58602.67 Da        Isoelectric Point: 4.6184

>NTDB_id=1064777 ACHMXE_RS40080 WP_209545985.1 5811675..5813264(-) (rpoN/rpoN1) [Variovorax sp. UC122_21]
MKQGLSLRVSQHLALTPQLQQSIRLLQLSTLELSQEVEQMLDENPFLERTAEEAAREEFGLDAADTPAPREDTEREAESD
YASAAPSTSTTSTETASSSEAEPALDSPEREPDWEGDGTVDMAPDDSEWGSDAPARNNSSTGDDERADATELARSQESLQ
SFLHRQALSLRLNENDSAALRFLIESLNDDGYLEDSLPALASGLAGDDNDQFDELVHHFQVALGLLQSLEPAGVGARDLG
ECLAIQLRALADEDETEDEELVRKTALAICKQPMELLARRDFKRLATLTRTNEELVRSALQIIARLEPKPGRRFVDVERN
IVIPDVIVTKTGRGTNVKFRVMLNPEVMPRLRVHDIYAGALKSHKGEGSQALSQRLQEARWFIKNIQQRFDTILRVSNAI
VERQKSYFVHGELAMRPLVLREIADELGLHESTISRVTTAKYMSTPFGTVELKYFFGSALGTETGGNASSTAVRALIKQF
VGSESVKKPLSDSQISEMLKEQGIECARRTVAKYREALRIAPANLRKAL

Nucleotide


Download         Length: 1590 bp        

>NTDB_id=1064777 ACHMXE_RS40080 WP_209545985.1 5811675..5813264(-) (rpoN/rpoN1) [Variovorax sp. UC122_21]
ATGAAACAAGGCTTGTCGCTGCGCGTTTCGCAGCATCTCGCGCTGACACCTCAGCTGCAGCAGTCGATCCGGCTGCTGCA
GCTCTCCACGCTCGAACTGAGCCAGGAGGTCGAGCAGATGCTCGACGAGAACCCCTTCCTCGAGCGCACCGCCGAGGAAG
CCGCGCGCGAGGAATTCGGCCTCGACGCCGCCGACACGCCGGCGCCGCGCGAGGACACCGAGCGCGAGGCCGAGAGCGAC
TACGCGAGCGCCGCGCCCTCGACCTCGACCACGTCCACCGAGACCGCCTCGTCGTCCGAGGCCGAGCCGGCCCTCGACTC
GCCCGAGCGCGAGCCCGACTGGGAAGGCGACGGCACCGTCGACATGGCGCCCGACGACAGCGAATGGGGCAGCGACGCGC
CCGCGCGCAACAACAGCAGCACCGGCGACGACGAGCGCGCCGATGCCACCGAGCTCGCGCGCAGCCAGGAATCGCTGCAG
TCCTTCCTGCACCGCCAGGCGCTGAGCCTGCGGCTCAACGAGAACGACAGCGCCGCGCTGCGCTTTTTGATCGAGTCGCT
CAACGACGACGGCTACCTCGAGGATTCGCTGCCTGCGCTGGCCTCGGGCCTCGCGGGCGACGACAACGACCAGTTCGACG
AACTGGTGCACCACTTCCAGGTCGCGCTGGGCCTGCTGCAGAGCCTGGAGCCCGCGGGCGTGGGCGCGCGCGACCTCGGC
GAATGCCTCGCGATCCAGCTGCGCGCGCTGGCCGACGAGGACGAGACCGAGGACGAGGAGCTGGTGCGCAAGACCGCGCT
GGCCATCTGCAAGCAGCCGATGGAGCTGCTCGCGCGGCGCGATTTCAAGCGCCTGGCCACGCTCACGCGAACCAACGAGG
AGCTGGTGCGCTCGGCGCTGCAGATCATCGCGCGCCTGGAGCCCAAGCCCGGCCGCCGCTTCGTCGACGTCGAGCGCAAC
ATCGTCATTCCCGACGTGATCGTGACCAAGACCGGCCGCGGCACCAATGTGAAGTTCCGCGTCATGCTCAACCCCGAGGT
GATGCCGCGGCTGCGCGTGCACGACATCTACGCCGGCGCGCTCAAGTCGCACAAGGGCGAGGGCAGCCAGGCGCTGTCGC
AGCGGCTGCAGGAGGCGCGCTGGTTCATCAAGAACATCCAGCAGCGCTTCGACACCATCCTGCGCGTGAGCAACGCCATC
GTCGAGCGGCAGAAGAGCTACTTCGTGCACGGCGAGCTCGCGATGCGCCCGCTGGTGCTGCGCGAGATCGCCGACGAGCT
CGGACTGCACGAATCCACCATCTCGCGCGTGACCACCGCCAAGTACATGTCCACGCCCTTCGGCACGGTCGAGCTCAAGT
ACTTCTTCGGCTCGGCGCTGGGCACCGAGACCGGCGGCAATGCCTCGAGCACCGCGGTGCGCGCGCTGATCAAGCAGTTC
GTCGGTTCGGAGAGCGTGAAGAAGCCGCTGTCGGACAGCCAGATCTCCGAGATGCTCAAGGAGCAGGGCATCGAGTGCGC
GCGCCGCACGGTGGCCAAGTACCGCGAGGCGCTGCGCATCGCGCCCGCCAACCTGCGCAAGGCCCTGTAG

Domains

Predicted by InterproScan.

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(5-48)

Sigma-54, DNA binding domain (Sigma54_DBD)

(371-527)

Sigma-54 factor, core binding domain (Sigma54_CBD)

(150-357)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

51.661

100

0.529

Multiple sequence alignment