Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilG   Type   Regulator
Locus tag   ACHMXA_RS29670 Genome accession   NZ_CP171978
Coordinates   6282984..6283382 (-) Length   132 a.a.
NCBI ID   WP_093205631.1    Uniprot ID   -
Organism   Variovorax sp. UC74_104     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 6277984..6288382
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACHMXA_RS29655 (ACHMXA_29655) - 6279715..6282021 (-) 2307 WP_176663433.1 methyl-accepting chemotaxis protein -
  ACHMXA_RS29660 (ACHMXA_29660) - 6282067..6282599 (-) 533 Protein_5863 chemotaxis protein CheW -
  ACHMXA_RS29665 (ACHMXA_29665) - 6282619..6282984 (-) 366 WP_081271090.1 response regulator transcription factor -
  ACHMXA_RS29670 (ACHMXA_29670) pilG 6282984..6283382 (-) 399 WP_093205631.1 PleD family two-component system response regulator Regulator
  ACHMXA_RS29675 (ACHMXA_29675) - 6283467..6283637 (-) 171 WP_007838397.1 rubredoxin -
  ACHMXA_RS29680 (ACHMXA_29680) - 6283749..6284711 (+) 963 WP_176663435.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  ACHMXA_RS29685 (ACHMXA_29685) hemL 6284837..6286123 (+) 1287 WP_395317415.1 glutamate-1-semialdehyde 2,1-aminomutase -
  ACHMXA_RS29690 (ACHMXA_29690) - 6286129..6286614 (+) 486 WP_395317416.1 hypothetical protein -
  ACHMXA_RS29695 (ACHMXA_29695) - 6286633..6287076 (-) 444 WP_395317417.1 hypothetical protein -
  ACHMXA_RS29700 (ACHMXA_29700) - 6287209..6287931 (+) 723 WP_395317418.1 TetR/AcrR family transcriptional regulator -

Sequence

Protein


Download         Length: 132 a.a.        Molecular weight: 14694.82 Da        Isoelectric Point: 7.3215

>NTDB_id=1064720 ACHMXA_RS29670 WP_093205631.1 6282984..6283382(-) (pilG) [Variovorax sp. UC74_104]
MGPNGSGYKVLVIDDSNTIRRSAEIFLKQGGHEVLLAEDGFDALSKVNDHKPHLIFCDILMPRLDGYQTCAIIKRNAHFS
NVPVVMLSSKDGVFDKARGRMVGSQDYLTKPFTKDQLLQAVQQFGTVQQEVQ

Nucleotide


Download         Length: 399 bp        

>NTDB_id=1064720 ACHMXA_RS29670 WP_093205631.1 6282984..6283382(-) (pilG) [Variovorax sp. UC74_104]
ATGGGCCCGAATGGATCTGGTTACAAAGTGCTGGTCATTGACGACAGCAACACCATCCGGCGCAGTGCCGAGATTTTTTT
GAAGCAGGGTGGGCACGAGGTTCTTCTCGCGGAAGACGGCTTCGACGCGCTCTCCAAGGTTAACGACCACAAGCCGCATC
TGATTTTCTGCGACATCCTGATGCCGCGCCTGGACGGCTACCAGACCTGCGCCATCATCAAGCGCAACGCCCACTTTTCC
AACGTCCCGGTCGTCATGCTGTCGTCGAAAGACGGTGTATTCGACAAGGCGCGCGGCCGAATGGTCGGATCGCAAGACTA
CCTGACCAAGCCTTTCACCAAAGACCAGCTGCTGCAGGCCGTGCAGCAGTTTGGCACCGTTCAACAGGAAGTGCAGTAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(10-122)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilG Acinetobacter baumannii strain A118

62.281

86.364

0.538

Multiple sequence alignment