Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   ACHFJ9_RS20075 Genome accession   NZ_CP171887
Coordinates   2631718..2632236 (-) Length   172 a.a.
NCBI ID   WP_005396698.1    Uniprot ID   A0AAE4S8W0
Organism   Vibrio sp. D3     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2626718..2637236
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACHFJ9_RS20050 (ACHFJ9_20050) rimM 2626783..2627331 (-) 549 WP_005379964.1 ribosome maturation factor RimM -
  ACHFJ9_RS20055 (ACHFJ9_20055) rpsP 2627361..2627609 (-) 249 WP_005379962.1 30S ribosomal protein S16 -
  ACHFJ9_RS20060 (ACHFJ9_20060) ffh 2627819..2629201 (-) 1383 WP_005385423.1 signal recognition particle protein -
  ACHFJ9_RS20065 (ACHFJ9_20065) - 2629426..2630220 (+) 795 WP_167426247.1 inner membrane protein YpjD -
  ACHFJ9_RS20070 (ACHFJ9_20070) - 2630345..2631613 (+) 1269 WP_005396696.1 HlyC/CorC family transporter -
  ACHFJ9_RS20075 (ACHFJ9_20075) luxS 2631718..2632236 (-) 519 WP_005396698.1 S-ribosylhomocysteine lyase Regulator
  ACHFJ9_RS20080 (ACHFJ9_20080) - 2632321..2632887 (-) 567 WP_012841415.1 hypothetical protein -
  ACHFJ9_RS20085 (ACHFJ9_20085) gshA 2632951..2634519 (-) 1569 WP_104970943.1 glutamate--cysteine ligase -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 19078.77 Da        Isoelectric Point: 4.6153

>NTDB_id=1064655 ACHFJ9_RS20075 WP_005396698.1 2631718..2632236(-) (luxS) [Vibrio sp. D3]
MPLLDSFTVDHTRMNAPAVRVAKTMQTPKGDTITVFDLRFTAPNKDILSEKGIHTLEHLYAGFMRNHLNSDSVEIIDISP
MGCRTGFYMSLIGTPSEQQVADAWIAAMEDVLKVESQNKIPELNEYQCGTAAMHSLEEAQQIAKSILDAGVSVNKNDELA
LPESMLKELRID

Nucleotide


Download         Length: 519 bp        

>NTDB_id=1064655 ACHFJ9_RS20075 WP_005396698.1 2631718..2632236(-) (luxS) [Vibrio sp. D3]
ATGCCTTTACTCGATAGTTTTACCGTGGACCACACTCGCATGAATGCACCAGCAGTGCGAGTGGCGAAGACCATGCAGAC
CCCAAAAGGGGACACGATTACTGTCTTCGATTTACGCTTTACCGCGCCAAACAAAGACATCCTTTCTGAAAAAGGTATTC
ATACGCTAGAGCACCTTTATGCAGGCTTTATGCGCAATCATCTTAACAGCGATTCTGTTGAGATCATCGATATTTCGCCT
ATGGGTTGCCGCACGGGCTTTTACATGAGTCTGATTGGCACTCCATCAGAGCAGCAAGTAGCGGATGCTTGGATTGCGGC
CATGGAAGACGTACTAAAGGTAGAAAGCCAGAACAAGATCCCTGAACTCAACGAATACCAATGTGGCACGGCAGCGATGC
ACTCTTTAGAAGAAGCACAACAGATCGCCAAGAGCATTTTGGATGCTGGTGTATCGGTGAACAAAAATGATGAACTTGCT
TTGCCTGAATCGATGCTAAAAGAGCTGCGCATCGACTAG

Domains

Predicted by InterproScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-154)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

86.55

99.419

0.86

Multiple sequence alignment