Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxO   Type   Regulator
Locus tag   ACHFJ9_RS17980 Genome accession   NZ_CP171887
Coordinates   2168166..2169572 (-) Length   468 a.a.
NCBI ID   WP_395355786.1    Uniprot ID   -
Organism   Vibrio sp. D3     
Function   promote HapR production (predicted from homology)   
Competence regulation

Genomic Context

Location: 2163166..2174572
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACHFJ9_RS17945 (ACHFJ9_17945) moaE 2163692..2164147 (-) 456 WP_048625774.1 molybdopterin synthase catalytic subunit MoaE -
  ACHFJ9_RS17950 (ACHFJ9_17950) moaD 2164149..2164406 (-) 258 WP_005396646.1 molybdopterin synthase sulfur carrier subunit -
  ACHFJ9_RS17955 (ACHFJ9_17955) moaC 2164403..2164882 (-) 480 WP_005396647.1 cyclic pyranopterin monophosphate synthase MoaC -
  ACHFJ9_RS17960 (ACHFJ9_17960) moaB 2164909..2165421 (-) 513 WP_005396648.1 molybdenum cofactor biosynthesis protein B -
  ACHFJ9_RS17965 (ACHFJ9_17965) moaA 2165527..2166516 (-) 990 WP_005396649.1 GTP 3',8-cyclase MoaA -
  ACHFJ9_RS17970 (ACHFJ9_17970) - 2166815..2167711 (+) 897 WP_006742807.1 YvcK family protein -
  ACHFJ9_RS17975 (ACHFJ9_17975) luxU 2167825..2168169 (-) 345 WP_012841577.1 quorum-sensing phosphorelay protein LuxU -
  ACHFJ9_RS17980 (ACHFJ9_17980) luxO 2168166..2169572 (-) 1407 WP_395355786.1 quorum-sensing sigma-54 dependent transcriptional regulator LuxO Regulator
  ACHFJ9_RS17985 (ACHFJ9_17985) uvrB 2169866..2171896 (-) 2031 WP_065646646.1 excinuclease ABC subunit UvrB -
  ACHFJ9_RS17995 (ACHFJ9_17995) rsxA 2172860..2173438 (+) 579 WP_005380762.1 electron transport complex subunit RsxA -
  ACHFJ9_RS18000 (ACHFJ9_18000) rsxB 2173442..2174038 (+) 597 WP_005396655.1 electron transport complex subunit RsxB -

Sequence

Protein


Download         Length: 468 a.a.        Molecular weight: 52145.70 Da        Isoelectric Point: 6.2543

>NTDB_id=1064648 ACHFJ9_RS17980 WP_395355786.1 2168166..2169572(-) (luxO) [Vibrio sp. D3]
MQQKSEGPKSRYLLMVEDTASVAALYRSYLTPLGIDINIVGTGRDAIESLNHRIPDLILLDLRLPDMTGMDVLHAVKKSH
PDVPIIFMTAHGSIDTAVEAMRHGSQDFLIKPCEADRLRVTVNNAIRKATKLKNEADNPGNQSYQGFIGSSQTMQQVYRT
IDSAANSKASIFITGESGTGKEVCAEAIHAASKRGDKPFIAINCAAIPKDLIESELFGHVKGAFTGAANDRQGAAELADG
GTLFLDELCEMDLDLQTKLLRFIQTGTFQKVGSSKMKSVDVRFVCATNRDPWKEVQEGRFREDLYYRLYVIPLHLPPLRE
RGEDVIEIAYSLLGYMSHEEGKSFVRFAPDVIDRFNSYEWPGNVRQLQNVLRNIVVLNNGKEITLDMLPPPLNQPLDRPS
SVAKFIEPKVMTASEIMPLWMTEKMAIEQAIEACDGNIPRAAGYLDVSPSTIYRKLQAWNGKEERQKV

Nucleotide


Download         Length: 1407 bp        

>NTDB_id=1064648 ACHFJ9_RS17980 WP_395355786.1 2168166..2169572(-) (luxO) [Vibrio sp. D3]
ATGCAACAAAAATCTGAAGGTCCTAAATCTCGTTACCTTTTAATGGTTGAGGATACCGCATCTGTTGCGGCACTGTACCG
CTCATACCTGACACCGCTTGGTATAGATATCAATATTGTCGGTACAGGTAGGGATGCCATTGAAAGTCTCAACCATAGAA
TTCCAGATCTTATTCTGCTCGATCTTCGTCTGCCAGATATGACGGGGATGGACGTTTTACACGCTGTAAAAAAGAGTCAT
CCAGACGTACCTATTATTTTTATGACCGCTCACGGTTCTATCGATACCGCGGTAGAAGCAATGCGTCATGGCTCTCAAGA
CTTTTTGATCAAACCGTGTGAAGCAGACCGTTTACGTGTCACGGTTAACAATGCGATTCGTAAAGCGACTAAGTTAAAAA
ACGAGGCTGATAACCCGGGAAATCAGAGTTATCAAGGCTTTATTGGCAGCAGCCAAACTATGCAACAGGTTTACCGCACG
ATTGATTCAGCAGCGAACAGTAAAGCGAGTATCTTCATCACTGGTGAAAGTGGTACGGGTAAAGAGGTATGTGCCGAGGC
AATCCATGCGGCAAGCAAGCGTGGTGACAAGCCTTTTATTGCGATTAACTGTGCTGCAATTCCAAAAGATTTGATTGAGA
GTGAACTGTTTGGTCACGTGAAAGGTGCTTTTACCGGTGCAGCAAATGATCGTCAGGGTGCAGCGGAATTAGCGGATGGT
GGCACACTTTTCCTTGATGAACTGTGTGAGATGGACTTAGATTTGCAAACCAAATTGCTACGATTTATTCAAACCGGCAC
GTTCCAAAAAGTGGGCTCATCAAAAATGAAGAGCGTGGATGTTCGCTTTGTTTGTGCAACTAACCGTGACCCATGGAAAG
AGGTACAAGAAGGTCGATTCCGTGAAGATTTGTACTATCGTTTGTATGTCATTCCTTTGCATTTGCCACCTTTACGTGAA
CGAGGTGAAGATGTCATTGAAATTGCATACTCACTGTTAGGCTATATGTCGCACGAAGAAGGAAAAAGCTTCGTGCGTTT
TGCGCCTGATGTAATCGACCGATTTAATAGCTATGAGTGGCCAGGCAACGTTCGTCAGTTACAAAACGTGCTGCGCAATA
TCGTTGTTCTAAACAACGGTAAAGAAATCACGTTGGATATGTTACCGCCACCGCTGAATCAACCGCTTGACCGTCCGTCT
TCTGTGGCGAAATTCATTGAGCCGAAAGTGATGACTGCGTCTGAGATTATGCCGTTGTGGATGACAGAAAAAATGGCGAT
AGAGCAAGCGATTGAAGCGTGTGATGGCAATATCCCCCGAGCGGCGGGATACCTTGATGTCAGTCCGTCGACGATTTACC
GCAAGTTACAGGCTTGGAATGGCAAGGAAGAGCGGCAAAAAGTATGA

Domains

Predicted by InterproScan.

Sigma-54 interaction domain (Sigma54_activat)

(148-313)

Bacterial regulatory protein, Fis family (HTH_8)

(419-459)

Response regulator receiver domain (Response_reg)

(14-122)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxO Vibrio cholerae strain A1552

86.86

95.94

0.833

Multiple sequence alignment