Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxO   Type   Regulator
Locus tag   ACHFJ9_RS15190 Genome accession   NZ_CP171887
Coordinates   1565034..1566557 (-) Length   507 a.a.
NCBI ID   WP_395357369.1    Uniprot ID   -
Organism   Vibrio sp. D3     
Function   promote HapR production (predicted from homology)   
Competence regulation

Genomic Context

Location: 1560034..1571557
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACHFJ9_RS15170 (ACHFJ9_15170) - 1560042..1561472 (-) 1431 WP_395357361.1 lipopolysaccharide biosynthesis protein -
  ACHFJ9_RS15175 (ACHFJ9_15175) - 1561465..1562637 (-) 1173 WP_395357363.1 glycosyltransferase family 4 protein -
  ACHFJ9_RS15180 (ACHFJ9_15180) - 1562649..1563833 (-) 1185 WP_395357365.1 glycosyltransferase -
  ACHFJ9_RS15185 (ACHFJ9_15185) - 1563989..1565059 (-) 1071 WP_395357367.1 glycosyltransferase family 4 protein -
  ACHFJ9_RS15190 (ACHFJ9_15190) luxO 1565034..1566557 (-) 1524 WP_395357369.1 sigma-54-dependent transcriptional regulator Regulator
  ACHFJ9_RS15195 (ACHFJ9_15195) - 1566834..1567214 (-) 381 WP_256965217.1 Hpt domain-containing protein -
  ACHFJ9_RS15200 (ACHFJ9_15200) - 1567226..1567912 (-) 687 WP_047008761.1 AAA family ATPase -
  ACHFJ9_RS15205 (ACHFJ9_15205) - 1567912..1570014 (-) 2103 WP_104974121.1 SLBB domain-containing protein -
  ACHFJ9_RS15210 (ACHFJ9_15210) - 1570011..1570877 (-) 867 WP_046875254.1 OmpA family protein -
  ACHFJ9_RS15215 (ACHFJ9_15215) - 1570904..1571224 (-) 321 WP_005394270.1 STAS domain-containing protein -

Sequence

Protein


Download         Length: 507 a.a.        Molecular weight: 56824.69 Da        Isoelectric Point: 6.1649

>NTDB_id=1064646 ACHFJ9_RS15190 WP_395357369.1 1565034..1566557(-) (luxO) [Vibrio sp. D3]
MRPRVLLVEDSTSLAILYKQYVKDEPYDIFHVETGREAIQFIERSKPQLIILDLKLPDMSGEDVLDWINQNDIPTSVIIA
TAHGSVDLAVNLIQKGAEDFLEKPINADRLKTSVALHLKRAKLEDLVENIQSKFDRHNYHGFIGSSLPMQAVYKTIDAVA
PTSASVFIVGESGTGKEVCAEAVHRQSNRKDKPFIAINCGAIPRDLMESEIFGHVKGAFTGATTDRKGAATLAHGGTLFL
DELCEMELEMQKKLLRFLQTGTYTPLGGTREMKVDVRIICATNRDPLTEVEEGRFREDLYYRVHVIPIDMPPLRERGSDI
VTLAKHFLTTYAKQDKKKFSTIDSEAQHIIKHYEWPGNVRQLQNIIRNIVVLNNDEKVTVNHLPAQLTRKSKTVRTSTPA
HVTQEPANPTTITSQPVYVEEQSAPAREPSIPTPEPNIQSSAAASPYFNSEGTIRPMWQVEREAIQNAIAYCDGNVLNAA
VMLELSPSTVYRKKQAWEADEINLEQS

Nucleotide


Download         Length: 1524 bp        

>NTDB_id=1064646 ACHFJ9_RS15190 WP_395357369.1 1565034..1566557(-) (luxO) [Vibrio sp. D3]
ATGAGACCAAGGGTGTTACTGGTAGAAGACTCTACTTCACTAGCCATACTTTATAAGCAGTACGTCAAAGACGAACCTTA
TGACATTTTTCATGTCGAAACAGGTCGCGAAGCAATTCAATTTATTGAAAGAAGCAAACCTCAACTCATCATTCTCGATT
TGAAACTGCCCGATATGTCTGGTGAAGACGTATTGGATTGGATAAACCAAAATGACATTCCTACCTCCGTTATTATTGCT
ACAGCGCATGGCAGCGTAGACTTAGCCGTTAACCTAATTCAAAAAGGTGCGGAAGATTTCTTAGAAAAACCTATTAACGC
TGATCGCCTAAAAACTTCTGTTGCATTACACCTCAAACGCGCCAAATTGGAAGATTTAGTAGAAAATATTCAGTCCAAGT
TTGATCGCCATAACTATCACGGATTTATCGGTTCAAGTCTCCCAATGCAGGCGGTATATAAAACTATTGATGCCGTTGCT
CCAACATCTGCCAGTGTCTTTATTGTGGGTGAAAGCGGCACAGGTAAAGAAGTCTGTGCTGAAGCCGTGCACCGTCAGAG
CAACCGTAAAGACAAGCCTTTTATTGCTATTAACTGCGGGGCTATCCCACGAGATTTAATGGAAAGTGAGATTTTTGGCC
ACGTCAAAGGCGCATTTACCGGGGCCACAACAGACCGAAAAGGTGCTGCGACGCTGGCTCACGGTGGGACGCTTTTTCTC
GATGAACTGTGTGAAATGGAACTTGAGATGCAAAAGAAGTTGCTCCGTTTTCTTCAAACAGGAACCTACACACCGCTTGG
TGGCACTCGAGAGATGAAGGTGGATGTCCGAATCATTTGTGCCACCAACCGAGATCCATTAACAGAAGTGGAAGAAGGTC
GTTTTCGTGAAGATTTGTATTACCGCGTACACGTAATACCTATCGATATGCCCCCTCTGCGCGAGCGAGGAAGTGACATT
GTCACGCTAGCCAAGCACTTTTTGACCACTTATGCCAAACAGGACAAAAAGAAATTCTCAACAATCGACAGCGAAGCTCA
ACATATCATCAAGCACTACGAATGGCCGGGTAATGTAAGGCAATTACAAAACATCATACGTAACATTGTGGTGCTTAATA
ATGACGAAAAAGTCACGGTGAATCACCTACCCGCTCAACTGACTAGAAAGTCTAAAACGGTGAGAACATCCACTCCCGCA
CATGTAACTCAAGAGCCAGCAAACCCTACAACAATAACATCCCAACCTGTGTATGTTGAGGAACAGTCGGCCCCCGCTAG
AGAACCGTCAATACCGACACCGGAACCTAACATACAATCCTCAGCGGCTGCCTCGCCGTACTTTAACTCTGAAGGAACCA
TTCGCCCTATGTGGCAAGTGGAACGTGAGGCGATTCAAAACGCAATCGCATACTGTGATGGCAACGTTCTCAATGCCGCC
GTAATGCTGGAGCTAAGCCCATCTACGGTTTACCGAAAAAAACAAGCATGGGAAGCGGATGAAATTAATCTCGAACAATC
TTGA

Domains

Predicted by InterproScan.

Sigma-54 interaction domain (Sigma54_activat)

(143-308)

Response regulator receiver domain (Response_reg)

(5-114)

Bacterial regulatory protein, Fis family (HTH_8)

(457-493)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxO Vibrio cholerae strain A1552

49.696

97.239

0.483

Multiple sequence alignment