Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   ACHFJ9_RS14385 Genome accession   NZ_CP171887
Coordinates   1379573..1380994 (-) Length   473 a.a.
NCBI ID   WP_005397785.1    Uniprot ID   A0AAE4M4S2
Organism   Vibrio sp. D3     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1374573..1385994
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACHFJ9_RS14360 (ACHFJ9_14360) - 1375090..1375740 (+) 651 WP_046874957.1 thiopurine S-methyltransferase -
  ACHFJ9_RS14365 (ACHFJ9_14365) purT 1375812..1376987 (-) 1176 WP_104974217.1 formate-dependent phosphoribosylglycinamide formyltransferase -
  ACHFJ9_RS14370 (ACHFJ9_14370) cdd 1377133..1378020 (-) 888 WP_005397788.1 cytidine deaminase -
  ACHFJ9_RS14375 (ACHFJ9_14375) - 1378464..1379141 (-) 678 WP_330943593.1 LrgB family protein -
  ACHFJ9_RS14380 (ACHFJ9_14380) - 1379143..1379517 (-) 375 WP_395357233.1 CidA/LrgA family protein -
  ACHFJ9_RS14385 (ACHFJ9_14385) sbcB 1379573..1380994 (-) 1422 WP_005397785.1 exodeoxyribonuclease I Machinery gene
  ACHFJ9_RS14390 (ACHFJ9_14390) - 1381151..1382524 (-) 1374 WP_005377885.1 L-cystine transporter -
  ACHFJ9_RS14395 (ACHFJ9_14395) - 1382725..1383414 (-) 690 WP_395357235.1 NAD(P)H-binding protein -
  ACHFJ9_RS14400 (ACHFJ9_14400) cobT 1383662..1384705 (+) 1044 WP_193447164.1 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase -
  ACHFJ9_RS14405 (ACHFJ9_14405) - 1384705..1385511 (+) 807 WP_176320413.1 adenosylcobinamide-GDP ribazoletransferase -

Sequence

Protein


Download         Length: 473 a.a.        Molecular weight: 54416.63 Da        Isoelectric Point: 4.8658

>NTDB_id=1064645 ACHFJ9_RS14385 WP_005397785.1 1379573..1380994(-) (sbcB) [Vibrio sp. D3]
MHQDNQPTFFFFDYETWGTNPAKDRPSQFAGVRTDENFNIIGEPLVMYCQPPADYLPSPEAALITGITPQKTVQEGLSEP
EFIAKIHAELAKPNTTSLGYNSIRFDDEVTRYTCYRNFIDPYAWSWQNGNSRWDLLDVLRACHALRPEGVEWPENEDGFT
SFKLEHLSVANGIEHSNAHDAMADVIATIEMAKKVKAAQPKLFDYFFSMRQKRKLNELVDIVNMTPLMHVSGMLGRECQY
TSWIVPVAWHPTNNNAVITIDLAKDPQPILELSAEELHERLYTKREDLGELLPVPVKLVHLNKCPILAPAKTLTAENAES
IGIDRQQCLANLALLRQHPEIREKLISLFSVERKFDKSDDVDTQLYDGFFSPADRAAMDIIRETDPNNLAALDIEFDDKR
IKPLLFRYRARNFPGTLDEQEQRRWALHCREVFESQIEEYMLNLENLVHEHESDEKKIAILKSVYRYVESLAS

Nucleotide


Download         Length: 1422 bp        

>NTDB_id=1064645 ACHFJ9_RS14385 WP_005397785.1 1379573..1380994(-) (sbcB) [Vibrio sp. D3]
ATGCACCAAGATAATCAGCCCACTTTTTTCTTCTTTGATTATGAGACATGGGGAACAAACCCCGCGAAAGATCGCCCAAG
CCAGTTTGCTGGTGTTCGTACAGATGAAAACTTCAATATCATCGGCGAGCCTTTAGTCATGTACTGTCAACCACCGGCTG
ATTATCTTCCGTCTCCTGAAGCCGCACTTATTACTGGTATTACTCCGCAAAAAACGGTTCAAGAAGGCCTTTCTGAGCCT
GAGTTTATCGCTAAGATTCACGCTGAACTCGCGAAACCAAATACCACCAGTTTAGGCTACAACAGCATTCGCTTTGATGA
CGAAGTGACACGTTATACTTGTTATCGCAACTTTATCGATCCATACGCATGGAGTTGGCAAAACGGTAACTCGCGTTGGG
ATTTACTCGATGTATTACGCGCGTGCCATGCCCTTCGCCCAGAAGGCGTAGAGTGGCCAGAAAACGAAGATGGCTTCACT
AGTTTTAAATTAGAGCACTTGTCTGTTGCTAACGGCATAGAACATAGTAACGCGCACGATGCGATGGCAGACGTGATTGC
GACTATCGAAATGGCGAAAAAAGTCAAAGCAGCGCAACCAAAATTGTTTGACTACTTCTTTTCTATGCGCCAAAAGCGCA
AGCTCAATGAATTAGTCGACATCGTCAACATGACGCCGTTGATGCACGTTTCAGGCATGCTAGGGCGCGAATGCCAGTAT
ACTAGCTGGATTGTGCCTGTTGCTTGGCATCCAACCAATAACAACGCTGTTATCACTATCGATTTAGCGAAAGACCCTCA
ACCTATTCTTGAGCTATCCGCAGAAGAGCTACACGAAAGACTCTACACTAAGCGAGAAGATCTTGGTGAATTGCTACCAG
TGCCAGTTAAACTAGTTCATTTGAACAAATGCCCTATTCTCGCCCCTGCAAAAACGTTAACGGCTGAAAATGCAGAGTCT
ATTGGCATTGATCGCCAGCAATGTCTCGCTAATCTCGCTTTGTTGCGCCAACATCCTGAAATTAGAGAAAAGCTGATTAG
CCTCTTTTCAGTCGAGCGTAAATTCGATAAAAGTGATGACGTCGATACGCAACTTTACGACGGATTCTTCTCTCCGGCCG
ATCGCGCAGCCATGGATATCATTCGAGAAACCGACCCGAACAATCTTGCCGCATTGGACATTGAATTTGATGACAAGCGC
ATTAAACCTCTATTGTTCCGCTATCGTGCGCGTAACTTCCCAGGCACATTAGACGAGCAAGAACAGAGACGCTGGGCATT
ACACTGTCGAGAAGTGTTTGAAAGCCAAATTGAAGAGTACATGCTGAATTTAGAAAACTTAGTTCACGAACATGAAAGTG
ACGAAAAGAAGATTGCGATATTAAAATCCGTGTACCGTTATGTAGAGAGCTTAGCTTCTTAA

Domains

Predicted by InterproScan.

Exonuclease C-terminal (Exonuc_X-T_C)

(210-469)

Exonuclease (RNase_T)

(11-190)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

79.915

100

0.799

Multiple sequence alignment