Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   ACHFJ9_RS09270 Genome accession   NZ_CP171887
Coordinates   266819..267826 (-) Length   335 a.a.
NCBI ID   WP_005379543.1    Uniprot ID   -
Organism   Vibrio sp. D3     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 261819..272826
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACHFJ9_RS09245 (ACHFJ9_09245) rraA 261881..262387 (-) 507 WP_005379537.1 ribonuclease E activity regulator RraA -
  ACHFJ9_RS09250 (ACHFJ9_09250) - 262464..263381 (-) 918 WP_005397953.1 1,4-dihydroxy-2-naphthoate polyprenyltransferase -
  ACHFJ9_RS09255 (ACHFJ9_09255) hslU 264024..265355 (-) 1332 WP_006742475.1 HslU--HslV peptidase ATPase subunit -
  ACHFJ9_RS09260 (ACHFJ9_09260) hslV 265379..265930 (-) 552 WP_005383176.1 ATP-dependent protease subunit HslV -
  ACHFJ9_RS09265 (ACHFJ9_09265) ftsN 266046..266594 (-) 549 WP_053809480.1 cell division protein FtsN -
  ACHFJ9_RS09270 (ACHFJ9_09270) cytR 266819..267826 (-) 1008 WP_005379543.1 DNA-binding transcriptional regulator CytR Regulator
  ACHFJ9_RS09275 (ACHFJ9_09275) priA 268151..270352 (-) 2202 WP_395356597.1 primosomal protein N' -
  ACHFJ9_RS09280 (ACHFJ9_09280) rpmE 270648..270869 (+) 222 WP_005379546.1 50S ribosomal protein L31 -
  ACHFJ9_RS09285 (ACHFJ9_09285) rpsJ 271325..271636 (+) 312 WP_004410492.1 30S ribosomal protein S10 -
  ACHFJ9_RS09290 (ACHFJ9_09290) rplC 271651..272280 (+) 630 WP_005379555.1 50S ribosomal protein L3 -

Sequence

Protein


Download         Length: 335 a.a.        Molecular weight: 36892.42 Da        Isoelectric Point: 6.2447

>NTDB_id=1064635 ACHFJ9_RS09270 WP_005379543.1 266819..267826(-) (cytR) [Vibrio sp. D3]
MATMKDVAQLAGVSTATVSRALMNPEKVSSSTRKRVEDAVLEAGYSPNSLARNLRRNESKTIVTIVPDICDPYFSEIIRG
IEDAAMEHGYLVLLGDSGQQKKRESSFVNLVFTKQADGMLLLGTDLPFDVSKPEQKNLPPMVMACEFAPELELPTVHIDN
LTSAFEAVNYLTQLGHKRIAQISGPDTAILCQFRQQGYQQALRRAGINKDPQYSVITEFSFDGGAKAVRKLLELPEPPTA
IFCHCDTMAIGAIQEAKKLGLRVPQDLSVVGFDDINFAQYCDPPLTTISQPRYEIGRQAMLMMLEMLKGHDVHSGSRLLE
TNLVIRGSAAPPQRP

Nucleotide


Download         Length: 1008 bp        

>NTDB_id=1064635 ACHFJ9_RS09270 WP_005379543.1 266819..267826(-) (cytR) [Vibrio sp. D3]
ATGGCGACAATGAAGGATGTTGCCCAGCTTGCGGGAGTGTCTACGGCTACGGTATCTCGAGCATTAATGAACCCAGAGAA
GGTCTCTTCTTCAACGAGAAAAAGAGTAGAAGATGCCGTACTTGAAGCGGGTTATTCTCCAAACTCATTAGCGCGTAACT
TACGTAGAAACGAATCAAAAACCATTGTCACTATCGTTCCCGACATCTGTGATCCTTATTTTTCTGAAATTATTCGCGGT
ATTGAAGATGCTGCCATGGAACATGGCTATCTAGTCCTGCTGGGCGATAGCGGACAACAGAAGAAACGCGAAAGTTCTTT
CGTTAACCTCGTATTTACTAAGCAGGCGGATGGAATGCTACTGCTTGGCACAGATCTACCGTTCGATGTCAGTAAGCCAG
AACAAAAGAACTTACCTCCGATGGTAATGGCGTGTGAATTTGCGCCAGAGTTAGAACTTCCGACAGTACATATTGACAAC
CTGACCTCAGCATTTGAAGCGGTGAATTACCTAACCCAACTAGGTCATAAACGCATCGCGCAAATCTCGGGGCCAGATAC
GGCAATATTGTGTCAGTTCCGCCAGCAAGGTTATCAACAAGCCTTGCGCCGTGCAGGCATCAATAAAGACCCTCAATATA
GTGTCATTACTGAGTTCTCTTTTGATGGCGGAGCAAAAGCCGTTCGTAAACTGCTCGAATTGCCTGAGCCACCAACGGCT
ATTTTCTGTCACTGTGACACAATGGCCATCGGCGCAATTCAAGAAGCGAAAAAGCTTGGCTTACGAGTACCGCAAGATCT
CTCTGTTGTGGGCTTTGATGACATTAACTTCGCTCAGTACTGCGATCCACCGTTGACCACCATCTCTCAGCCTCGCTATG
AGATTGGTCGACAAGCAATGCTAATGATGCTCGAGATGTTAAAAGGCCACGACGTGCATTCAGGCTCGCGTTTGCTTGAA
ACTAATCTCGTCATTCGCGGAAGTGCAGCGCCACCACAGCGCCCTTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, lacI family (LacI)

(3-48)

Periplasmic binding protein-like domain (Peripla_BP_3)

(168-328)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio parahaemolyticus RIMD 2210633

98.204

99.701

0.979
  cytR Vibrio cholerae C6706

89.521

99.701

0.893

Multiple sequence alignment