Detailed information    

insolico Bioinformatically predicted

Overview

Name   cqsA   Type   Regulator
Locus tag   ACHFJ9_RS01750 Genome accession   NZ_CP171886
Coordinates   393873..395054 (+) Length   393 a.a.
NCBI ID   WP_395354957.1    Uniprot ID   -
Organism   Vibrio sp. D3     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 388873..400054
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACHFJ9_RS01730 (ACHFJ9_01730) - 389233..390594 (-) 1362 WP_395354954.1 GGDEF domain-containing protein -
  ACHFJ9_RS01735 (ACHFJ9_01735) - 390601..390702 (-) 102 Protein_340 LuxR C-terminal-related transcriptional regulator -
  ACHFJ9_RS01740 (ACHFJ9_01740) - 390722..391909 (-) 1188 WP_258614588.1 EAL domain-containing protein -
  ACHFJ9_RS01745 (ACHFJ9_01745) ylqF 392588..393532 (+) 945 WP_005376521.1 ribosome biogenesis GTPase YlqF -
  ACHFJ9_RS01750 (ACHFJ9_01750) cqsA 393873..395054 (+) 1182 WP_395354957.1 alpha-hydroxyketone-type quorum-sensing autoinducer synthase Regulator
  ACHFJ9_RS01755 (ACHFJ9_01755) cqsS 395159..397204 (-) 2046 WP_074190596.1 response regulator Regulator
  ACHFJ9_RS01760 (ACHFJ9_01760) - 397572..398189 (+) 618 WP_395354959.1 HAD family hydrolase -
  ACHFJ9_RS01765 (ACHFJ9_01765) - 398276..398824 (-) 549 WP_005398196.1 GNAT family N-acetyltransferase -

Sequence

Protein


Download         Length: 393 a.a.        Molecular weight: 43707.06 Da        Isoelectric Point: 6.2680

>NTDB_id=1064628 ACHFJ9_RS01750 WP_395354957.1 393873..395054(+) (cqsA) [Vibrio sp. D3]
MSETIQSKPLPSFIEERLDFHIQDLIEPNENKKHLVLGKRPPCNAVVMQSNDYLALSHNKEIQNAHRDAIAQHDDNVVMS
AIFLQDDESKPAFETQLASFVGMPSCLLSQSGWAANVGLLQTICAPNIPVYIDFFAHMSLWEGARIAGAQIHPFMHNNTN
HLRKQISRHGSGIIVVDSVYSTIGTIAPLRDIYEIAQEFDCGLVVDESHSLGTHGPQGAGLLQELDLTHMVDFVTVSLAK
TFAYRAGAILGAEKLAKTLPFVAYPAIFSSTVLPQEIIRLEKTLDVIKKVDDKREILFKRAKSLAVGLKRIGFTIRSESQ
IIALECGNERNTERVRDFLEERNVFGAVFCRPATGRNKNIIRFSVNADMTAAEVDRVLSACQEAFVHPDLEFV

Nucleotide


Download         Length: 1182 bp        

>NTDB_id=1064628 ACHFJ9_RS01750 WP_395354957.1 393873..395054(+) (cqsA) [Vibrio sp. D3]
ATGAGTGAAACTATACAAAGCAAACCACTTCCTTCCTTTATTGAGGAACGCCTAGATTTTCATATTCAAGATCTAATTGA
ACCGAACGAGAACAAAAAACACCTTGTTCTTGGTAAACGTCCACCGTGTAATGCCGTTGTTATGCAAAGCAATGATTACC
TGGCACTGTCTCATAACAAGGAGATTCAAAACGCGCATCGTGATGCGATTGCTCAACACGATGACAACGTCGTGATGTCC
GCGATTTTCTTGCAAGATGATGAGTCGAAACCTGCATTTGAAACTCAACTAGCCAGTTTTGTCGGCATGCCTAGCTGTCT
GCTTTCTCAATCGGGATGGGCTGCGAATGTCGGTTTATTACAGACTATTTGTGCACCGAACATACCTGTGTATATCGACT
TCTTTGCGCATATGTCTTTATGGGAAGGCGCACGTATCGCAGGAGCACAAATTCATCCGTTCATGCATAACAACACCAAC
CACTTGCGAAAACAGATTTCACGCCATGGTTCGGGAATTATTGTTGTGGATTCGGTTTACAGCACTATCGGAACCATTGC
TCCTCTACGTGATATCTACGAAATAGCACAAGAGTTTGACTGCGGCTTAGTTGTGGATGAATCGCACTCGTTAGGTACGC
ACGGTCCGCAAGGCGCTGGGCTACTGCAAGAGCTGGATTTGACTCATATGGTGGATTTTGTAACCGTAAGTCTTGCAAAG
ACATTTGCTTATCGTGCTGGCGCAATTTTAGGGGCAGAAAAGCTGGCGAAGACGCTTCCATTTGTCGCGTACCCTGCCAT
TTTCAGCTCTACCGTGTTACCGCAAGAGATTATTAGGTTAGAAAAAACACTGGACGTCATAAAAAAAGTCGATGACAAGC
GGGAGATTTTGTTTAAAAGAGCGAAGTCTCTAGCCGTTGGTTTAAAACGTATTGGGTTTACTATTCGCAGTGAGTCGCAA
ATTATCGCGCTAGAATGTGGCAACGAAAGAAACACTGAGCGAGTTCGCGACTTTTTAGAAGAAAGGAATGTCTTTGGTGC
AGTTTTCTGTCGCCCTGCAACAGGAAGAAACAAGAACATCATTCGTTTTTCTGTCAATGCGGACATGACTGCCGCCGAAG
TCGATCGCGTTCTTTCCGCCTGCCAAGAAGCGTTTGTTCATCCCGATCTAGAGTTTGTATAA

Domains

Predicted by InterproScan.

Aminotransferase class I and II (Aminotran_1_2)

(46-379)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cqsA Vibrio cholerae strain A1552

57.364

98.473

0.565

Multiple sequence alignment