Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   ACHMJP_RS15375 Genome accession   NZ_CP171883
Coordinates   3024663..3025292 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain STECUZB006     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
ICE 3013585..3036466 3024663..3025292 within 0


Gene organization within MGE regions


Location: 3013585..3036466
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACHMJP_RS15315 - 3013585..3014604 (+) 1020 WP_001299351.1 tyrosine-type recombinase/integrase -
  ACHMJP_RS15320 yccA 3015012..3015671 (+) 660 WP_000375136.1 FtsH protease modulator YccA -
  ACHMJP_RS15325 tusE 3015762..3016091 (+) 330 WP_000904442.1 sulfurtransferase TusE -
  ACHMJP_RS15330 yccX 3016088..3016366 (-) 279 WP_000048252.1 acylphosphatase -
  ACHMJP_RS15335 rlmI 3016461..3017651 (+) 1191 WP_000116297.1 23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI -
  ACHMJP_RS15340 hspQ 3017709..3018026 (+) 318 WP_001295356.1 heat shock protein HspQ -
  ACHMJP_RS15345 yccU 3018071..3018484 (-) 414 WP_001301418.1 CoA-binding protein -
  ACHMJP_RS15350 csgI 3018657..3019319 (+) 663 WP_000847791.1 DUF2057 family protein -
  ACHMJP_RS15355 mgsA 3019415..3019873 (+) 459 WP_000424181.1 methylglyoxal synthase -
  ACHMJP_RS15360 helD 3019905..3021959 (-) 2055 WP_407095288.1 DNA helicase IV -
  ACHMJP_RS15365 yccF 3022082..3022528 (+) 447 WP_001261235.1 YccF domain-containing protein -
  ACHMJP_RS15370 yccS 3022538..3024700 (+) 2163 WP_000875061.1 YccS family putative transporter -
  ACHMJP_RS15375 sxy/tfoX 3024663..3025292 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  ACHMJP_RS15380 sulA 3025511..3026020 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  ACHMJP_RS15385 ompA 3026377..3027417 (+) 1041 WP_000750416.1 porin OmpA -
  ACHMJP_RS15390 matP 3027493..3027945 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  ACHMJP_RS15395 ycbZ 3028131..3029891 (+) 1761 WP_000156518.1 Lon protease family protein -
  ACHMJP_RS15400 fabA 3029960..3030478 (+) 519 WP_000227927.1 bifunctional 3-hydroxydecanoyl-ACP dehydratase/trans-2-decenoyl-ACP isomerase -
  ACHMJP_RS15405 rmf 3030548..3030715 (-) 168 WP_000828648.1 ribosome modulation factor -
  ACHMJP_RS15410 pqiC 3030971..3031534 (-) 564 WP_000759120.1 membrane integrity-associated transporter subunit PqiC -
  ACHMJP_RS15415 pqiB 3031531..3033171 (-) 1641 WP_000445533.1 intermembrane transport protein PqiB -
  ACHMJP_RS15420 pqiA 3033176..3034429 (-) 1254 WP_000333176.1 membrane integrity-associated transporter subunit PqiA -
  ACHMJP_RS15425 uup 3034559..3036466 (-) 1908 WP_000053099.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=1064618 ACHMJP_RS15375 WP_000839153.1 3024663..3025292(-) (sxy/tfoX) [Escherichia coli strain STECUZB006]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=1064618 ACHMJP_RS15375 WP_000839153.1 3024663..3025292(-) (sxy/tfoX) [Escherichia coli strain STECUZB006]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1

Multiple sequence alignment