Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   ACHMKG_RS14570 Genome accession   NZ_CP171874
Coordinates   2989498..2990127 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain YZ22PE67     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2984498..2995127
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACHMKG_RS14555 helD 2984740..2986794 (-) 2055 WP_001295354.1 DNA helicase IV -
  ACHMKG_RS14560 yccF 2986917..2987363 (+) 447 WP_001261235.1 YccF domain-containing protein -
  ACHMKG_RS14565 yccS 2987373..2989535 (+) 2163 WP_000875061.1 YccS family putative transporter -
  ACHMKG_RS14570 sxy/tfoX 2989498..2990127 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  ACHMKG_RS14575 sulA 2990346..2990855 (+) 510 WP_001554869.1 SOS-induced cell division inhibitor SulA -
  ACHMKG_RS14580 ompA 2991212..2992252 (+) 1041 WP_000750416.1 porin OmpA -
  ACHMKG_RS14585 matP 2992328..2992780 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  ACHMKG_RS14590 ycbZ 2992966..2994726 (+) 1761 WP_000156518.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=1064595 ACHMKG_RS14570 WP_000839153.1 2989498..2990127(-) (sxy/tfoX) [Escherichia coli strain YZ22PE67]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=1064595 ACHMKG_RS14570 WP_000839153.1 2989498..2990127(-) (sxy/tfoX) [Escherichia coli strain YZ22PE67]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1

Multiple sequence alignment