Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   ACHMKH_RS14560 Genome accession   NZ_CP171869
Coordinates   2991181..2991810 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain YZ22PE68     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2986181..2996810
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACHMKH_RS14545 helD 2986423..2988477 (-) 2055 WP_001295354.1 DNA helicase IV -
  ACHMKH_RS14550 yccF 2988600..2989046 (+) 447 WP_001261235.1 YccF domain-containing protein -
  ACHMKH_RS14555 yccS 2989056..2991218 (+) 2163 WP_000875061.1 YccS family putative transporter -
  ACHMKH_RS14560 sxy/tfoX 2991181..2991810 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  ACHMKH_RS14565 sulA 2992029..2992538 (+) 510 WP_001554869.1 SOS-induced cell division inhibitor SulA -
  ACHMKH_RS14570 ompA 2992895..2993935 (+) 1041 WP_000750416.1 porin OmpA -
  ACHMKH_RS14575 matP 2994011..2994463 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  ACHMKH_RS14580 ycbZ 2994649..2996409 (+) 1761 WP_000156518.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=1064573 ACHMKH_RS14560 WP_000839153.1 2991181..2991810(-) (sxy/tfoX) [Escherichia coli strain YZ22PE68]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=1064573 ACHMKH_RS14560 WP_000839153.1 2991181..2991810(-) (sxy/tfoX) [Escherichia coli strain YZ22PE68]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1

Multiple sequence alignment