Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   ACHMKI_RS07565 Genome accession   NZ_CP171864
Coordinates   1588740..1589369 (+) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain YZ22PE106     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1583740..1594369
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACHMKI_RS07545 ycbZ 1584141..1585901 (-) 1761 WP_000156518.1 Lon protease family protein -
  ACHMKI_RS07550 matP 1586087..1586539 (+) 453 WP_000877161.1 macrodomain Ter protein MatP -
  ACHMKI_RS07555 ompA 1586615..1587655 (-) 1041 WP_000750416.1 porin OmpA -
  ACHMKI_RS07560 sulA 1588012..1588521 (-) 510 WP_001554869.1 SOS-induced cell division inhibitor SulA -
  ACHMKI_RS07565 sxy/tfoX 1588740..1589369 (+) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  ACHMKI_RS07570 yccS 1589332..1591494 (-) 2163 WP_000875061.1 YccS family putative transporter -
  ACHMKI_RS07575 yccF 1591504..1591950 (-) 447 WP_001261235.1 YccF domain-containing protein -
  ACHMKI_RS07580 helD 1592073..1594127 (+) 2055 WP_001295354.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=1064542 ACHMKI_RS07565 WP_000839153.1 1588740..1589369(+) (sxy/tfoX) [Escherichia coli strain YZ22PE106]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=1064542 ACHMKI_RS07565 WP_000839153.1 1588740..1589369(+) (sxy/tfoX) [Escherichia coli strain YZ22PE106]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1

Multiple sequence alignment