Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   ACHEXL_RS00765 Genome accession   NZ_CP171843
Coordinates   165790..167331 (-) Length   513 a.a.
NCBI ID   WP_416560168.1    Uniprot ID   -
Organism   Limnohabitans sp. yimb22184     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 160790..172331
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACHEXL_RS00740 (ACHEXL_00740) - 161228..162238 (+) 1011 WP_416560163.1 Bug family tripartite tricarboxylate transporter substrate binding protein -
  ACHEXL_RS00745 (ACHEXL_00745) - 162238..163209 (+) 972 WP_416560164.1 alpha/beta fold hydrolase -
  ACHEXL_RS00750 (ACHEXL_00750) - 163222..163998 (-) 777 WP_416560165.1 UPF0149 family protein -
  ACHEXL_RS00755 (ACHEXL_00755) - 164017..164466 (-) 450 WP_416560166.1 PIN domain-containing protein -
  ACHEXL_RS00760 (ACHEXL_00760) - 164463..165779 (-) 1317 WP_416560167.1 THUMP domain-containing class I SAM-dependent RNA methyltransferase -
  ACHEXL_RS00765 (ACHEXL_00765) rpoN/rpoN1 165790..167331 (-) 1542 WP_416560168.1 RNA polymerase factor sigma-54 Machinery gene
  ACHEXL_RS00770 (ACHEXL_00770) lptB 167369..168127 (-) 759 WP_416560169.1 LPS export ABC transporter ATP-binding protein -
  ACHEXL_RS00775 (ACHEXL_00775) lptA 168124..168753 (-) 630 WP_416560170.1 lipopolysaccharide transport periplasmic protein LptA -
  ACHEXL_RS00780 (ACHEXL_00780) - 168909..169577 (-) 669 WP_416560171.1 thiol:disulfide interchange protein DsbA/DsbL -
  ACHEXL_RS00785 (ACHEXL_00785) - 169607..170257 (-) 651 WP_416560172.1 SPOR domain-containing protein -
  ACHEXL_RS00790 (ACHEXL_00790) argS 170269..171942 (-) 1674 WP_416560173.1 arginine--tRNA ligase -

Sequence

Protein


Download         Length: 513 a.a.        Molecular weight: 56293.61 Da        Isoelectric Point: 4.7038

>NTDB_id=1064498 ACHEXL_RS00765 WP_416560168.1 165790..167331(-) (rpoN/rpoN1) [Limnohabitans sp. yimb22184]
MKPGLSLRMSQHLALTPQLQQSIRLLQLSTLELSQEVDQMLDENPFLERAEEEAPAEAFGLEQADTHVSLGDRVSESAST
SSSSDDSASETRDEAVTDVAESWDGDGSVDMRPDDSEWGGDAAPRQNNGEETADAIDLARSSGSLTDFLHRQALSLRLSE
VDRAALRFLIESLNDDGYLIDTLPELAASLAGTDDFEQIDELVHRFTVALGLLQSLEPVGVGARDLAECLRIQVKAWLQD
DPDDEVAQAALAICAHPLEMLAKRDFKRLAVACGLSEAVVKAAIAFIARLEPKPGRPFVQAEQNIIIPDVLVVNTSKTAT
PKFRIQLNPDVMPKLRVHDIYANALRGGKGDNHAGLQQRLQEARWFIKNIQQRFDTILRVSTAIVERQKNFLTHGELAMR
PLVLREIADELGMHESTISRVTTAKYMATPQGTFELKYFFGSGLGTDSGSAASSTAVRALIKQFVAAEKPAKPLSDNQIS
EMLKEQGIDCARRTVAKYREALKIAPANLRKTL

Nucleotide


Download         Length: 1542 bp        

>NTDB_id=1064498 ACHEXL_RS00765 WP_416560168.1 165790..167331(-) (rpoN/rpoN1) [Limnohabitans sp. yimb22184]
ATGAAGCCCGGCCTGTCACTGCGCATGTCCCAGCACCTGGCGCTCACGCCCCAGTTGCAACAATCGATTCGCCTGCTGCA
GCTGTCCACCTTGGAGCTGTCGCAAGAAGTCGACCAGATGCTGGACGAGAACCCGTTTTTGGAACGCGCCGAAGAAGAAG
CGCCTGCCGAAGCCTTTGGCCTGGAGCAGGCCGACACCCATGTCAGCCTGGGCGACCGGGTGAGCGAAAGCGCCAGCACA
TCGAGCAGCAGCGACGACAGCGCCAGCGAAACCCGCGACGAAGCGGTGACCGATGTGGCCGAAAGCTGGGATGGCGACGG
CAGCGTGGACATGCGTCCCGACGACAGCGAATGGGGTGGCGACGCCGCGCCGCGCCAAAACAACGGCGAAGAAACCGCCG
ACGCCATCGACCTGGCCCGCAGCAGCGGGTCCCTGACCGACTTTTTGCACCGCCAGGCCTTGTCGCTGCGCCTGTCCGAA
GTAGACCGTGCCGCGCTGCGCTTTCTGATCGAATCGCTCAACGACGACGGCTACCTGATCGACACCCTGCCCGAACTGGC
TGCCAGCTTGGCAGGCACAGACGACTTCGAGCAAATCGACGAACTGGTGCACCGCTTCACCGTGGCGCTGGGCTTGCTGC
AGTCGCTCGAACCCGTGGGCGTGGGCGCACGCGACTTGGCCGAGTGCCTGCGCATCCAGGTCAAGGCCTGGCTGCAGGAC
GACCCGGATGATGAAGTGGCCCAAGCGGCGCTGGCCATCTGCGCCCACCCTCTGGAAATGCTGGCCAAGCGCGACTTCAA
ACGGCTGGCGGTGGCCTGTGGCCTGAGCGAAGCCGTGGTCAAAGCCGCCATCGCCTTCATCGCCCGGCTCGAGCCCAAAC
CCGGCCGCCCCTTTGTGCAGGCCGAGCAAAACATCATCATCCCCGACGTGCTGGTGGTGAACACCAGCAAGACGGCGACG
CCCAAATTCCGCATCCAGCTCAACCCCGACGTGATGCCCAAGCTGCGCGTGCACGACATCTATGCCAACGCCTTGCGCGG
CGGCAAGGGGGACAACCATGCGGGCCTGCAGCAGCGCCTGCAAGAAGCGCGCTGGTTCATCAAGAACATCCAGCAGCGCT
TTGACACCATCTTGCGCGTGTCCACCGCCATCGTAGAGCGTCAGAAAAACTTCTTGACGCACGGCGAGCTGGCCATGCGC
CCACTGGTGCTGCGCGAGATTGCTGACGAGCTGGGCATGCACGAGTCCACCATCAGCCGCGTGACCACGGCCAAATACAT
GGCCACGCCGCAAGGCACCTTTGAGCTGAAGTATTTCTTCGGCTCGGGCCTGGGCACCGACAGCGGCAGCGCCGCGTCCA
GCACCGCGGTGCGGGCGCTCATCAAGCAGTTTGTGGCCGCCGAAAAACCGGCCAAACCGCTGTCGGACAACCAGATTTCC
GAGATGCTGAAAGAGCAAGGCATCGACTGCGCCCGGCGCACGGTGGCCAAGTACCGCGAAGCCCTGAAGATCGCGCCTGC
GAACCTGCGCAAAACCCTTTGA

Domains

Predicted by InterproScan.

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(5-48)

Sigma-54, DNA binding domain (Sigma54_DBD)

(356-511)

Sigma-54 factor, core binding domain (Sigma54_CBD)

(138-341)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

52.199

100

0.532

Multiple sequence alignment