Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   ACHEXK_RS02555 Genome accession   NZ_CP171842
Coordinates   574749..575786 (-) Length   345 a.a.
NCBI ID   WP_416548835.1    Uniprot ID   -
Organism   Limnohabitans sp. DCL3     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 569749..580786
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACHEXK_RS02530 (ACHEXK_02530) - 570229..570942 (+) 714 WP_416547749.1 SCO family protein -
  ACHEXK_RS02535 (ACHEXK_02535) - 570946..572076 (+) 1131 WP_416547751.1 COX15/CtaA family protein -
  ACHEXK_RS02540 (ACHEXK_02540) cyoE 572073..572969 (+) 897 WP_416547753.1 heme o synthase -
  ACHEXK_RS02545 (ACHEXK_02545) - 572979..573584 (+) 606 WP_416547755.1 SCO family protein -
  ACHEXK_RS02550 (ACHEXK_02550) rpoH 573660..574592 (-) 933 WP_416547757.1 RNA polymerase sigma factor RpoH -
  ACHEXK_RS02555 (ACHEXK_02555) pilA 574749..575786 (-) 1038 WP_416548835.1 signal recognition particle-docking protein FtsY Machinery gene
  ACHEXK_RS02560 (ACHEXK_02560) - 575815..577263 (+) 1449 WP_416547759.1 M16 family metallopeptidase -
  ACHEXK_RS02565 (ACHEXK_02565) - 577308..578690 (+) 1383 WP_416547761.1 M16 family metallopeptidase -
  ACHEXK_RS02570 (ACHEXK_02570) rsmD 578734..579426 (+) 693 WP_416547763.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  ACHEXK_RS02575 (ACHEXK_02575) coaD 579423..579929 (+) 507 WP_416547765.1 pantetheine-phosphate adenylyltransferase -

Sequence

Protein


Download         Length: 345 a.a.        Molecular weight: 36349.69 Da        Isoelectric Point: 7.0679

>NTDB_id=1064487 ACHEXK_RS02555 WP_416548835.1 574749..575786(-) (pilA) [Limnohabitans sp. DCL3]
MFSFFKKKSPPPEVQSPSTPAAAPASAPATAVVESGASSAPTPAPAPRQGWLDRLKSGLRKTGASITTVFTGTRIDDVLY
EELETALLMADTGVKATEHLLQDLKRRVKESKATDPSQVKTLLADAITDLLSPLQKPLAIGDHHPTVIMVAGVNGAGKTT
SIGKLTKHLADEGLSVLLAAADTFRAAAKEQLAVWADRNTVEIVSQQGGDPAAVSFDAVSAGRARGRDVVLVDTAGRLPT
QLHLMEELKKIKRVVQKADSTAPHEVLLVIDGNTGQNALAQVKAFDDTLGLTGLIVTKLDGTAKGGVLCAIAREKPIPVY
FIGVGEKLEDLETFNAREFAQALLS

Nucleotide


Download         Length: 1038 bp        

>NTDB_id=1064487 ACHEXK_RS02555 WP_416548835.1 574749..575786(-) (pilA) [Limnohabitans sp. DCL3]
ATGTTCAGTTTCTTCAAAAAAAAATCCCCCCCCCCAGAGGTTCAATCCCCTTCCACACCTGCAGCTGCGCCTGCTTCGGC
CCCTGCAACAGCTGTGGTGGAGTCGGGGGCATCCTCTGCGCCCACACCTGCACCGGCCCCTCGCCAGGGTTGGCTGGACC
GCCTGAAGTCGGGTCTGCGCAAAACCGGCGCCAGCATCACCACCGTCTTCACCGGCACGCGCATTGACGATGTGCTCTAC
GAGGAGCTGGAGACCGCCTTGTTGATGGCCGATACGGGCGTCAAAGCCACAGAGCATTTGCTGCAAGACCTCAAACGCCG
CGTGAAAGAAAGCAAAGCGACCGACCCTTCACAAGTCAAGACCCTGTTGGCCGATGCCATCACCGACTTGCTGTCACCCC
TGCAAAAGCCCCTGGCCATTGGTGACCACCACCCCACGGTGATCATGGTGGCGGGCGTCAACGGCGCGGGCAAAACCACC
TCGATTGGCAAACTGACGAAACATTTGGCCGACGAAGGCCTGAGCGTTTTGTTGGCTGCAGCCGACACGTTCCGCGCAGC
GGCCAAGGAGCAGCTGGCGGTTTGGGCCGACCGCAACACGGTGGAAATCGTCAGTCAGCAAGGCGGCGACCCGGCCGCCG
TCAGCTTTGACGCGGTCAGTGCTGGTCGCGCCCGCGGACGCGACGTGGTGTTGGTCGATACCGCCGGACGCCTGCCCACC
CAACTGCACCTGATGGAAGAGCTGAAAAAAATCAAGCGTGTGGTGCAAAAAGCCGATTCCACTGCCCCGCACGAGGTGTT
GCTGGTGATCGATGGCAACACGGGTCAAAACGCTCTGGCCCAGGTCAAAGCCTTTGACGACACCCTGGGCCTCACGGGCT
TGATCGTGACCAAGCTCGACGGCACCGCCAAGGGCGGGGTGCTGTGCGCCATTGCCCGCGAAAAGCCGATTCCGGTTTAT
TTCATCGGTGTGGGCGAAAAGCTGGAGGACTTGGAAACCTTCAACGCCCGTGAGTTTGCCCAAGCCCTGCTGAGCTGA

Domains

Predicted by InterproScan.

SRP54-type protein, GTPase domain (SRP54)

(145-344)

SRP54-type protein, helical bundle domain (SRP54_N)

(65-126)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

59

86.957

0.513

Multiple sequence alignment