Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   ACHEXK_RS01010 Genome accession   NZ_CP171842
Coordinates   212970..214511 (-) Length   513 a.a.
NCBI ID   WP_416547396.1    Uniprot ID   -
Organism   Limnohabitans sp. DCL3     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 207970..219511
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACHEXK_RS00985 (ACHEXK_00985) - 208235..209245 (+) 1011 WP_416547392.1 Bug family tripartite tricarboxylate transporter substrate binding protein -
  ACHEXK_RS00990 (ACHEXK_00990) - 209245..210228 (+) 984 WP_416547393.1 alpha/beta fold hydrolase -
  ACHEXK_RS00995 (ACHEXK_00995) - 210286..211062 (-) 777 WP_416547394.1 UPF0149 family protein -
  ACHEXK_RS01000 (ACHEXK_01000) - 211143..211538 (-) 396 WP_416548804.1 PIN domain-containing protein -
  ACHEXK_RS01005 (ACHEXK_01005) - 211631..212959 (-) 1329 WP_416547395.1 THUMP domain-containing class I SAM-dependent RNA methyltransferase -
  ACHEXK_RS01010 (ACHEXK_01010) rpoN/rpoN1 212970..214511 (-) 1542 WP_416547396.1 RNA polymerase factor sigma-54 Machinery gene
  ACHEXK_RS01015 (ACHEXK_01015) lptB 214552..215310 (-) 759 WP_416547397.1 LPS export ABC transporter ATP-binding protein -
  ACHEXK_RS01020 (ACHEXK_01020) lptA 215307..215945 (-) 639 WP_416547398.1 lipopolysaccharide transport periplasmic protein LptA -
  ACHEXK_RS01025 (ACHEXK_01025) - 216106..216759 (-) 654 WP_416547399.1 thiol:disulfide interchange protein DsbA/DsbL -
  ACHEXK_RS01030 (ACHEXK_01030) - 216787..217446 (-) 660 WP_416547400.1 SPOR domain-containing protein -
  ACHEXK_RS01035 (ACHEXK_01035) argS 217458..219167 (-) 1710 WP_416547401.1 arginine--tRNA ligase -

Sequence

Protein


Download         Length: 513 a.a.        Molecular weight: 56355.64 Da        Isoelectric Point: 4.7876

>NTDB_id=1064486 ACHEXK_RS01010 WP_416547396.1 212970..214511(-) (rpoN/rpoN1) [Limnohabitans sp. DCL3]
MKPGLSLRMSQHLALTPQLQQSIRLLQLSTLELSQEVDQMLDENPFLERSEEEAAAEAFGLPQSDTHVSLGDRVSESAST
SSSSEDGPSETRDEAVTDVAESWDGDGSVDMRPDDSEWGGDAGPRQSNGEETADAIDLARSSGSLTDFLHRQALSLRLSE
VDSAALRFLIESLNDDGYLTESLPELAASLAGSDDHEQIDELVHRFTVALGLLQSLEPVGVGARDLAECLRIQIKAWLKD
DPEDEVAQAALAICKQPLEMLAKRDFKRLAVSCGLDEAWVKAAIPFIARLEPKPGRPFVQAEQNIIIPDVLVVNTSKTAT
PKFRIQLNPDVMPKLRVHDIYANALRGSKGSSHAGLQQRLQEARWFIKNIQQRFDTILRVSTAIVERQKNFLTHGELAMR
PLVLREIADELGMHESTISRVTTAKYMSTPQGTFELKYFFGSGLGTDSGSAASSTAVRALIKQFVAAEKPAKPLSDNQIS
EMLKEQGIDCARRTVAKYREALKIAPANLRKTL

Nucleotide


Download         Length: 1542 bp        

>NTDB_id=1064486 ACHEXK_RS01010 WP_416547396.1 212970..214511(-) (rpoN/rpoN1) [Limnohabitans sp. DCL3]
ATGAAACCCGGTCTGTCGCTGCGCATGTCCCAGCACCTGGCGCTCACGCCCCAGTTGCAACAATCGATCCGCCTGCTGCA
ACTGTCCACGCTGGAGCTGTCGCAGGAGGTCGACCAGATGCTGGACGAAAACCCGTTTCTCGAGCGCAGCGAAGAGGAGG
CCGCCGCCGAAGCCTTTGGTCTTCCGCAGTCCGACACGCACGTCAGCCTGGGCGACCGGGTCAGTGAAAGCGCCAGCACG
TCCAGCAGCAGCGAAGATGGGCCCAGCGAAACCCGCGACGAAGCCGTCACCGATGTGGCCGAAAGCTGGGATGGCGATGG
CAGCGTGGACATGCGCCCCGACGACAGCGAATGGGGCGGCGATGCCGGCCCTCGGCAAAGCAACGGCGAAGAAACCGCCG
ACGCCATCGACCTGGCCCGCAGCAGCGGCTCCCTGACCGATTTTTTGCACCGCCAAGCCTTGTCGCTGCGCTTGTCCGAA
GTGGACAGTGCCGCCCTGCGCTTTTTGATTGAATCGCTCAACGACGACGGTTATCTGACCGAGTCCCTGCCCGAACTGGC
GGCCAGCTTGGCCGGCAGCGATGACCATGAACAGATCGACGAACTGGTGCACCGCTTCACCGTGGCACTGGGATTGCTGC
AGTCGCTCGAACCCGTGGGCGTGGGCGCCCGCGATTTGGCCGAATGCCTGCGCATCCAAATCAAAGCCTGGCTGAAGGAC
GATCCGGAGGATGAAGTCGCCCAAGCCGCGCTGGCCATTTGCAAGCAGCCCCTGGAGATGTTGGCCAAACGCGACTTCAA
GCGCCTGGCCGTCTCGTGCGGCTTGGACGAAGCCTGGGTCAAAGCCGCCATCCCCTTCATCGCCAGGCTGGAGCCCAAGC
CCGGCCGACCCTTTGTGCAGGCCGAGCAAAACATCATCATCCCCGATGTGTTGGTGGTGAACACCAGCAAGACCGCCACG
CCGAAATTTCGCATCCAGCTCAACCCGGACGTGATGCCCAAATTGCGCGTGCACGACATCTATGCCAACGCCCTGCGCGG
CAGCAAAGGCTCGTCTCATGCGGGCTTGCAACAGCGCCTGCAAGAAGCGCGTTGGTTCATCAAAAACATCCAGCAGCGCT
TTGACACCATCTTGCGCGTGTCCACCGCCATCGTGGAACGCCAAAAGAATTTCCTCACGCACGGCGAGCTGGCCATGCGC
CCGCTGGTGCTGCGCGAGATCGCTGACGAGTTGGGCATGCACGAGTCCACCATCAGCCGCGTGACCACGGCCAAATACAT
GTCCACCCCGCAGGGCACGTTTGAGCTGAAGTACTTCTTTGGCTCGGGGCTGGGCACCGACAGCGGCAGCGCCGCATCAA
GCACCGCCGTGCGGGCGCTCATCAAGCAGTTTGTCGCCGCTGAAAAACCCGCCAAACCGCTGTCGGACAACCAGATTTCC
GAGATGCTGAAAGAGCAAGGCATCGATTGCGCCCGCCGCACGGTGGCCAAGTACCGCGAAGCCCTGAAGATCGCGCCTGC
CAACCTGCGCAAAACCCTTTGA

Domains

Predicted by InterproScan.

Sigma-54 factor, core binding domain (Sigma54_CBD)

(138-341)

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(5-48)

Sigma-54, DNA binding domain (Sigma54_DBD)

(356-511)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

53.346

100

0.544

Multiple sequence alignment