Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   ACHD8M_RS12895 Genome accession   NZ_CP171807
Coordinates   2584514..2585281 (-) Length   255 a.a.
NCBI ID   WP_007408287.1    Uniprot ID   A0AAP3YCF1
Organism   Bacillus velezensis strain BRI3     
Function   ssDNA annealing; plasmid transformation (predicted from homology)   
DNA processing Homologous recombination

Genomic Context

Location: 2579514..2590281
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACHD8M_RS12875 - 2579716..2580528 (-) 813 WP_017418169.1 pyruvate, water dikinase regulatory protein -
  ACHD8M_RS12880 ccpN 2580554..2581192 (-) 639 WP_003152989.1 transcriptional regulator CcpN -
  ACHD8M_RS12885 glyS 2581293..2583332 (-) 2040 WP_159354383.1 glycine--tRNA ligase subunit beta -
  ACHD8M_RS12890 glyQ 2583325..2584212 (-) 888 WP_003152984.1 glycine--tRNA ligase subunit alpha -
  ACHD8M_RS12895 recO 2584514..2585281 (-) 768 WP_007408287.1 DNA repair protein RecO Machinery gene
  ACHD8M_RS12900 - 2585318..2585461 (-) 144 WP_159354384.1 YqzL family protein -
  ACHD8M_RS12905 era 2585617..2586522 (-) 906 WP_007408285.1 GTPase Era -
  ACHD8M_RS12910 - 2586503..2586913 (-) 411 WP_003152976.1 cytidine deaminase -
  ACHD8M_RS12915 - 2587037..2587411 (-) 375 WP_003152974.1 diacylglycerol kinase family protein -
  ACHD8M_RS12920 ybeY 2587392..2587865 (-) 474 WP_159354385.1 rRNA maturation RNase YbeY -
  ACHD8M_RS12925 - 2587866..2589998 (-) 2133 WP_014418406.1 HD family phosphohydrolase -

Sequence

Protein


Download         Length: 255 a.a.        Molecular weight: 29292.91 Da        Isoelectric Point: 8.5625

>NTDB_id=1064349 ACHD8M_RS12895 WP_007408287.1 2584514..2585281(-) (recO) [Bacillus velezensis strain BRI3]
MLTKCEGIVLRTNDYGETNKIVTLLTREHGKIGVMARGARKSASRLSAVSQPFLYGSFLMQRTSGLGTLQQGEMILSMRT
IREDLFLTAYAAFIAELTDKGTEEKKPNPYLFELILESFKRLNDGTDPDVITFIVQMKMLGVMGLYPELNHCVHCKSGEG
TFHFSIRDNGFICHRCFEKDPYRVPISPQTARLLRLFYYFDIGRLGSVSLKQETKNEIKRVIDLYYEEYSGLYLKSKRFL
DQMESMKNLLDENKS

Nucleotide


Download         Length: 768 bp        

>NTDB_id=1064349 ACHD8M_RS12895 WP_007408287.1 2584514..2585281(-) (recO) [Bacillus velezensis strain BRI3]
ATGCTGACTAAATGTGAAGGAATCGTGCTCCGGACGAATGACTACGGGGAGACGAATAAAATCGTGACATTGCTGACGAG
GGAACACGGCAAAATCGGCGTCATGGCAAGGGGCGCCAGGAAGTCAGCCAGCCGGCTGTCAGCAGTCAGCCAGCCGTTTT
TGTACGGGTCATTTTTAATGCAAAGAACATCTGGACTCGGCACGCTCCAGCAGGGTGAAATGATTCTCAGCATGAGAACG
ATCAGAGAAGATTTATTTTTGACGGCGTATGCCGCTTTTATCGCTGAACTCACTGACAAAGGAACGGAAGAGAAGAAACC
GAACCCCTATTTATTCGAATTGATTCTCGAATCCTTTAAGAGGCTGAATGACGGGACTGACCCGGACGTGATCACCTTCA
TCGTGCAGATGAAAATGCTCGGCGTCATGGGGCTGTATCCGGAGCTGAATCATTGTGTCCACTGCAAAAGCGGGGAAGGG
ACGTTTCATTTTTCGATAAGAGATAACGGGTTTATCTGCCACCGCTGCTTTGAAAAGGATCCGTACAGAGTTCCGATTTC
GCCGCAAACGGCAAGGCTGCTAAGGCTTTTTTATTACTTTGATATCGGAAGGCTCGGCAGCGTCTCGTTAAAACAGGAAA
CCAAAAACGAAATTAAACGGGTCATTGATCTGTATTACGAGGAATATTCAGGACTTTATTTAAAGTCAAAACGGTTTTTA
GATCAGATGGAAAGCATGAAGAACCTTTTGGATGAAAACAAAAGTTGA

Domains

Predicted by InterproScan.

Recombination protein O C terminal (RecO_C)

(82-237)

Recombination protein O N terminal (RecO_N)

(1-75)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Bacillus subtilis subsp. subtilis str. 168

89.02

100

0.89

Multiple sequence alignment