Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   ACHD8M_RS07930 Genome accession   NZ_CP171807
Coordinates   1478391..1478675 (+) Length   94 a.a.
NCBI ID   WP_024085249.1    Uniprot ID   -
Organism   Bacillus velezensis strain BRI3     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 1473391..1483675
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACHD8M_RS07910 - 1474637..1475545 (+) 909 WP_172869213.1 ketopantoate reductase family protein -
  ACHD8M_RS07915 - 1475574..1476806 (-) 1233 WP_007409644.1 aminopeptidase -
  ACHD8M_RS07920 - 1476907..1477041 (-) 135 WP_003154559.1 protein YkpC -
  ACHD8M_RS07925 mreBH 1477113..1478120 (-) 1008 WP_014417632.1 cell shape-determining protein MreBH -
  ACHD8M_RS07930 abrB 1478391..1478675 (+) 285 WP_024085249.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  ACHD8M_RS07935 - 1478848..1480152 (+) 1305 WP_014417634.1 ATP-binding protein -
  ACHD8M_RS07940 - 1480154..1480981 (+) 828 WP_014417635.1 gamma-glutamylcyclotransferase -
  ACHD8M_RS07945 ktrC 1481022..1481687 (+) 666 WP_003154554.1 Ktr system potassium transporter KtrC -
  ACHD8M_RS07950 ade 1481836..1483569 (+) 1734 WP_159354107.1 adenine deaminase -

Sequence

Protein


Download         Length: 94 a.a.        Molecular weight: 10574.41 Da        Isoelectric Point: 5.2271

>NTDB_id=1064332 ACHD8M_RS07930 WP_024085249.1 1478391..1478675(+) (abrB) [Bacillus velezensis strain BRI3]
MKSIGVVRKVDELGRIVMPIELRRALDIAIKDSIEFFVDGDKIVLKKYKPHGICLMTGEITSENQEYGNGKIILSPEGAK
MLLEEIEEALKDRS

Nucleotide


Download         Length: 285 bp        

>NTDB_id=1064332 ACHD8M_RS07930 WP_024085249.1 1478391..1478675(+) (abrB) [Bacillus velezensis strain BRI3]
ATGAAATCAATTGGTGTAGTAAGAAAAGTAGACGAACTCGGGCGTATTGTCATGCCGATTGAATTGAGAAGAGCATTGGA
TATCGCTATTAAAGATAGTATTGAATTTTTCGTTGACGGAGACAAAATTGTCTTAAAAAAATACAAGCCGCACGGCATTT
GCTTAATGACGGGGGAAATTACCTCCGAAAATCAGGAGTACGGCAACGGCAAAATTATTTTAAGTCCTGAAGGAGCGAAA
ATGCTGCTTGAGGAAATCGAGGAAGCGTTAAAAGATAGATCATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(54-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-51)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

55.435

97.872

0.543

Multiple sequence alignment