Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK   Type   Regulator
Locus tag   ACHD8M_RS05845 Genome accession   NZ_CP171807
Coordinates   1101707..1102285 (+) Length   192 a.a.
NCBI ID   WP_003155179.1    Uniprot ID   G1BIW7
Organism   Bacillus velezensis strain BRI3     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1096707..1107285
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACHD8M_RS05820 - 1097207..1097722 (-) 516 WP_369719112.1 methyl-accepting chemotaxis protein -
  ACHD8M_RS05825 - 1097966..1098706 (-) 741 Protein_1084 protoglobin domain-containing protein -
  ACHD8M_RS05830 - 1098622..1100145 (-) 1524 WP_070081593.1 FAD-dependent oxidoreductase -
  ACHD8M_RS05835 - 1100270..1101127 (+) 858 WP_072177103.1 SDR family oxidoreductase -
  ACHD8M_RS05840 - 1101158..1101391 (-) 234 WP_007610478.1 IDEAL domain-containing protein -
  ACHD8M_RS05845 comK 1101707..1102285 (+) 579 WP_003155179.1 competence protein ComK Regulator
  ACHD8M_RS05850 - 1102431..1102799 (+) 369 WP_012117235.1 iron chaperone -
  ACHD8M_RS05855 - 1102826..1103197 (+) 372 WP_032866165.1 iron chaperone -
  ACHD8M_RS05860 eis 1103245..1104456 (-) 1212 WP_032866164.1 enhanced intracellular survival protein Eis -
  ACHD8M_RS05865 - 1104613..1105323 (-) 711 WP_151295556.1 YrpD family protein -
  ACHD8M_RS05870 - 1105518..1105787 (+) 270 WP_003155168.1 excalibur calcium-binding domain-containing protein -

Sequence

Protein


Download         Length: 192 a.a.        Molecular weight: 22315.58 Da        Isoelectric Point: 8.1419

>NTDB_id=1064319 ACHD8M_RS05845 WP_003155179.1 1101707..1102285(+) (comK) [Bacillus velezensis strain BRI3]
MCQKTHAPLESYEVNRSTIAVLPEEIDGKMGSKVIEKDCILYVSMKPIHIIDRSCRYFGSSYAGRKAGTYEAIKISHKPP
IMVDPSNHIFLFPTLSSARPQCGWISHVHVKDFQPTAFDDTAVTFSNGKTMELEVSYHSFENQVYRTAYLRTTFQDRMGS
HIPKRQEFMLYPKEERTRMIYDFILRELGERY

Nucleotide


Download         Length: 579 bp        

>NTDB_id=1064319 ACHD8M_RS05845 WP_003155179.1 1101707..1102285(+) (comK) [Bacillus velezensis strain BRI3]
ATGTGCCAGAAAACACACGCACCCTTAGAAAGCTACGAAGTAAATCGTTCAACCATCGCTGTTTTGCCTGAGGAAATAGA
CGGTAAAATGGGGTCGAAGGTCATTGAAAAAGACTGCATTCTGTATGTCAGCATGAAGCCGATTCACATCATCGACAGAA
GCTGCCGCTACTTTGGCTCCAGCTATGCCGGGAGAAAAGCGGGAACATATGAAGCGATTAAAATTTCTCACAAGCCGCCG
ATTATGGTGGACCCTTCAAATCACATCTTTTTATTCCCTACACTTTCTTCTGCAAGGCCTCAATGCGGCTGGATATCTCA
TGTGCACGTTAAAGATTTTCAACCGACGGCATTTGATGACACAGCTGTCACGTTCTCAAACGGCAAAACGATGGAACTGG
AAGTATCCTATCATTCTTTTGAAAATCAGGTTTACAGAACCGCCTATCTCAGAACCACTTTTCAGGACAGGATGGGCAGT
CATATCCCGAAGCGGCAGGAATTCATGCTGTATCCGAAAGAAGAGCGGACAAGAATGATCTACGACTTTATTTTGCGGGA
GCTGGGGGAGAGATATTAG

Domains

Predicted by InterproScan.

ComK protein (ComK)

(10-158)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G1BIW7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK Bacillus subtilis subsp. subtilis str. 168

82.292

100

0.823

Multiple sequence alignment