Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   ACHFCC_RS15230 Genome accession   NZ_CP171806
Coordinates   3181411..3182769 (-) Length   452 a.a.
NCBI ID   WP_395139400.1    Uniprot ID   -
Organism   Schlegelella aquatica strain HS-12-14     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3176411..3187769
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACHFCC_RS15200 (ACHFCC_15200) - 3176558..3177379 (+) 822 WP_395139387.1 2-keto-4-pentenoate hydratase -
  ACHFCC_RS15205 (ACHFCC_15205) - 3177456..3177809 (+) 354 WP_264892435.1 DUF3147 family protein -
  ACHFCC_RS15210 (ACHFCC_15210) - 3178127..3178507 (+) 381 WP_395139391.1 VOC family protein -
  ACHFCC_RS15215 (ACHFCC_15215) - 3178722..3180155 (+) 1434 WP_395139393.1 alpha/beta hydrolase family protein -
  ACHFCC_RS15220 (ACHFCC_15220) - 3180172..3180864 (+) 693 WP_395139395.1 OmpW family protein -
  ACHFCC_RS15225 (ACHFCC_15225) - 3180915..3181313 (-) 399 WP_395139398.1 hypothetical protein -
  ACHFCC_RS15230 (ACHFCC_15230) radA 3181411..3182769 (-) 1359 WP_395139400.1 DNA repair protein RadA Machinery gene
  ACHFCC_RS15235 (ACHFCC_15235) - 3182798..3183160 (-) 363 WP_395139403.1 hypothetical protein -
  ACHFCC_RS15240 (ACHFCC_15240) - 3183184..3184236 (-) 1053 WP_395139405.1 calcium/sodium antiporter -
  ACHFCC_RS15245 (ACHFCC_15245) - 3184301..3185320 (-) 1020 WP_395139408.1 hypothetical protein -
  ACHFCC_RS15250 (ACHFCC_15250) - 3185404..3186075 (-) 672 WP_395139410.1 TetR/AcrR family transcriptional regulator -
  ACHFCC_RS15255 (ACHFCC_15255) alr 3186072..3187178 (-) 1107 WP_395139412.1 alanine racemase -

Sequence

Protein


Download         Length: 452 a.a.        Molecular weight: 48000.40 Da        Isoelectric Point: 7.4140

>NTDB_id=1064297 ACHFCC_RS15230 WP_395139400.1 3181411..3182769(-) (radA) [Schlegelella aquatica strain HS-12-14]
MAKEKTVYVCTECGGTSPKWLGKCPHCNAWNTLEETVPESGSRHRFQALAKSSPVTTLAEIEASDVERVPTGIEELDRVL
GGGIVAGAVVLIGGDPGIGKSTLLLQALEALSRRMRTLYVTGEESGAQVALRARRLGLDGSGVRVQAEIQLEKILATIEA
EKPDVAVIDSIQTIYSEQLTSAPGSVAQVRECSAQLTRTAKASGTAMVLVGHVTKEGALAGPRVLEHIVDTVLYFEGDTH
SAFRLVRAFKNRFGAVNEIGVFAMTERGLKGVANPSAIFLSTHNEPVAGSCVLVTLEGTRPMLVEIQALVDSSPIPSPRR
LSVGLEQNRLAMLLAVMHRHAGIACYDQDVFVNAVGGVRISEPAADLAVMLAIQSSLRGRPLPRGFLTFGEVGLAGEVRP
APRGQERLKEAAKLGFSVAVVPKANAPKKPIEGLAIHPVERVEQAIDVVKGL

Nucleotide


Download         Length: 1359 bp        

>NTDB_id=1064297 ACHFCC_RS15230 WP_395139400.1 3181411..3182769(-) (radA) [Schlegelella aquatica strain HS-12-14]
ATGGCGAAGGAAAAAACCGTCTACGTCTGCACCGAATGCGGCGGCACCAGCCCCAAGTGGCTGGGCAAGTGCCCGCACTG
CAACGCCTGGAACACGCTGGAAGAGACCGTGCCGGAAAGCGGCTCGCGGCACCGCTTCCAGGCGCTCGCCAAGTCCAGCC
CCGTCACGACCCTGGCCGAGATCGAAGCTTCGGATGTCGAGCGCGTGCCCACCGGCATCGAGGAGCTGGACCGCGTGCTG
GGCGGCGGCATCGTGGCCGGTGCGGTGGTGCTGATCGGCGGCGACCCGGGCATCGGCAAGTCGACGTTGCTGCTCCAGGC
GCTCGAGGCCTTGTCCCGACGCATGAGGACGCTCTACGTGACGGGCGAGGAGTCGGGTGCGCAGGTGGCGCTGCGCGCAC
GGCGGCTCGGGCTCGACGGCTCGGGCGTGCGCGTGCAGGCCGAGATCCAGCTGGAGAAGATCCTCGCCACGATCGAGGCG
GAGAAACCCGACGTTGCGGTGATCGACTCGATCCAGACCATCTACTCCGAGCAGCTCACCTCGGCGCCGGGCTCGGTCGC
GCAGGTGCGCGAGTGCTCGGCCCAGCTCACGCGCACGGCCAAGGCCAGCGGCACCGCGATGGTGCTGGTGGGGCACGTCA
CGAAGGAGGGCGCGCTCGCGGGGCCTCGGGTGCTCGAGCACATCGTCGACACGGTGCTCTACTTCGAAGGCGACACGCAC
AGCGCCTTCCGGCTCGTGCGCGCCTTCAAGAATCGCTTCGGTGCGGTCAACGAGATCGGCGTCTTTGCGATGACGGAGCG
GGGCTTGAAGGGCGTGGCCAACCCGAGTGCGATCTTCCTGTCCACCCACAACGAGCCGGTGGCCGGCTCCTGCGTGTTGG
TCACGCTCGAGGGCACGCGGCCCATGCTGGTGGAGATCCAAGCCCTGGTGGACAGCTCGCCGATCCCCAGCCCCCGGCGG
CTGAGCGTCGGCCTGGAGCAGAACCGGCTCGCGATGCTGCTCGCGGTGATGCACCGTCATGCGGGCATCGCCTGCTATGA
CCAGGACGTGTTCGTCAATGCGGTGGGCGGCGTGCGCATCAGCGAGCCGGCGGCGGACCTCGCGGTGATGCTCGCCATCC
AGAGCAGCTTGCGCGGCAGGCCGCTGCCCCGGGGCTTCCTCACCTTCGGCGAGGTGGGCTTGGCGGGCGAGGTGCGGCCG
GCACCGCGCGGGCAGGAGCGCTTGAAGGAAGCAGCCAAGCTGGGCTTCAGCGTGGCCGTGGTGCCCAAGGCCAACGCGCC
GAAGAAGCCGATCGAAGGCCTCGCGATCCACCCGGTCGAGCGTGTGGAGCAGGCGATCGACGTCGTCAAAGGCCTCTGA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(60-217)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

50.115

95.796

0.48
  radA Streptococcus mitis NCTC 12261

46.875

99.115

0.465
  radA Streptococcus pneumoniae Rx1

48.706

94.027

0.458
  radA Streptococcus pneumoniae D39

48.706

94.027

0.458
  radA Streptococcus pneumoniae R6

48.706

94.027

0.458
  radA Streptococcus pneumoniae TIGR4

48.706

94.027

0.458
  radA Streptococcus mitis SK321

48.706

94.027

0.458

Multiple sequence alignment