Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpC   Type   Regulator
Locus tag   ACG3JK_RS08530 Genome accession   NZ_CP171738
Coordinates   1658011..1660455 (+) Length   814 a.a.
NCBI ID   WP_013794487.1    Uniprot ID   -
Organism   Streptococcus parauberis strain DB-M23     
Function   degradation of ComX (predicted from homology)   
Competence regulation

Genomic Context

Location: 1653011..1665455
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACG3JK_RS08505 (ACG3JK_08505) - 1653439..1654398 (-) 960 WP_003107825.1 VOC family protein -
  ACG3JK_RS08510 (ACG3JK_08510) - 1654501..1656573 (-) 2073 WP_013794489.1 sodium:proton antiporter -
  ACG3JK_RS08515 (ACG3JK_08515) - 1656575..1656844 (-) 270 WP_003105467.1 hypothetical protein -
  ACG3JK_RS08520 (ACG3JK_08520) - 1657173..1657373 (+) 201 WP_003104168.1 cold-shock protein -
  ACG3JK_RS08525 (ACG3JK_08525) - 1657551..1658018 (+) 468 WP_003103836.1 CtsR family transcriptional regulator -
  ACG3JK_RS08530 (ACG3JK_08530) clpC 1658011..1660455 (+) 2445 WP_013794487.1 ATP-dependent Clp protease ATP-binding subunit Regulator
  ACG3JK_RS08535 (ACG3JK_08535) groES 1660650..1660934 (+) 285 WP_003105909.1 co-chaperone GroES -
  ACG3JK_RS08540 (ACG3JK_08540) groL 1660972..1662600 (+) 1629 WP_003107822.1 chaperonin GroEL -
  ACG3JK_RS08545 (ACG3JK_08545) - 1662750..1663244 (+) 495 WP_003107821.1 YSIRK-type signal peptide-containing protein -
  ACG3JK_RS08550 (ACG3JK_08550) - 1663201..1663380 (+) 180 WP_238570148.1 hypothetical protein -
  ACG3JK_RS08555 (ACG3JK_08555) - 1663301..1665079 (+) 1779 WP_259966522.1 G5 domain-containing protein -

Sequence

Protein


Download         Length: 814 a.a.        Molecular weight: 90227.56 Da        Isoelectric Point: 6.0116

>NTDB_id=1064092 ACG3JK_RS08530 WP_013794487.1 1658011..1660455(+) (clpC) [Streptococcus parauberis strain DB-M23]
MIDYSIKMQEIFKQAQYQAARFGSSHLETWHILLAMVKEEGSLAGLVFSEFNNKISEEEYEAAAILAVGKSPQDDIKEVH
FLGQSKTLTNILKFSEMISLVTNASEVGSEHVLFAILLNPDIMAARLLEMAGFKIKDDGQGQPKLADLRKAIEIQAAYSK
ETIKAIHELRKPKKAKGAGSFSDMMKPASTAGDLSDFTRDLTEMANQGLLEPVIGRDKEITRMIQVLSRKTKNNPVLVGD
AGVGKTALAYGLAQRIANGSIPYELQDMRVLELDMMSVVAGTRFRGDFEERMNQIIDDIETDGQIILFVDELHTIMGSGS
GIDSTLDAANILKPALSRGTLHMVGATTQEEYQKHIEKDAALSRRFAKVLIEEPNLEDAYQILLGLKGSYERFHNVSISD
QAVKTAVKVAHRYLTSKNLPDSAIDLLDEASATVQGLVKKEKASILTPIDQAILEKDFKTVSKLLKAQVNNKSAKPTLVT
EDNIMSTLSKLSGIPVEKLTQADSKKYLNLEKELHKRVIGQEDAVSAISRAIRRNQSGIRTGRRPIGSFMFLGPTGVGKT
ELAKALAEVLFDDESALIRFDMSEYMEKFAASRLNGAPPGYVGYEEGGELTEKVRNKPYSVLLFDEVEKAHPDIFNVLLQ
VLDDGMLTDSRGRRVDFSNTIIIMTSNLGATALRDDKTVGFGAKDISQDHQAMEKRILEELKKSYRPEFINRIDEKVVFH
SLSQEDMKEVVMIMVKPLVTNLAEKGVSLKIQPSALNYLSEEGYDVEMGARPLRRTLQTHIEDKLSELILSGDLSSGHQL
KIGMSHGKLKFDIE

Nucleotide


Download         Length: 2445 bp        

>NTDB_id=1064092 ACG3JK_RS08530 WP_013794487.1 1658011..1660455(+) (clpC) [Streptococcus parauberis strain DB-M23]
ATGATTGATTACTCAATAAAGATGCAAGAGATATTTAAACAGGCCCAGTACCAAGCAGCTCGCTTTGGCAGTTCGCATTT
GGAGACCTGGCATATTCTCTTAGCAATGGTGAAAGAAGAAGGTTCCCTAGCAGGATTAGTTTTTAGTGAATTTAATAATA
AAATTTCAGAAGAAGAATATGAAGCAGCTGCAATTTTGGCCGTGGGAAAAAGTCCTCAAGATGATATTAAAGAAGTGCAT
TTCTTAGGTCAGTCCAAGACTTTAACCAATATTCTTAAGTTTTCTGAAATGATAAGTTTGGTTACAAATGCTTCTGAAGT
AGGTTCAGAGCATGTTCTTTTTGCAATTTTGTTAAATCCAGATATTATGGCTGCCCGACTCTTAGAGATGGCTGGCTTCA
AAATTAAGGATGATGGACAAGGACAACCAAAGCTTGCTGATCTCAGAAAAGCTATTGAAATACAGGCGGCATATAGTAAA
GAAACAATTAAAGCTATTCATGAGTTACGAAAACCTAAAAAAGCCAAAGGTGCTGGATCTTTTTCTGACATGATGAAGCC
GGCTAGTACAGCTGGAGACTTGTCAGATTTCACCAGAGACCTAACGGAAATGGCCAACCAAGGACTATTAGAACCAGTTA
TCGGCAGAGATAAAGAAATCACACGGATGATTCAGGTTCTCAGTCGTAAAACCAAGAACAATCCTGTACTAGTTGGAGAT
GCTGGTGTTGGTAAGACAGCCTTAGCTTATGGACTAGCTCAACGGATTGCCAATGGATCAATTCCTTATGAATTGCAAGA
TATGCGGGTCTTGGAATTAGATATGATGAGTGTTGTTGCGGGTACACGTTTCCGTGGGGACTTCGAAGAAAGAATGAATC
AAATCATCGACGATATTGAGACGGATGGTCAGATTATTCTTTTTGTTGATGAACTACATACAATCATGGGTTCTGGTAGT
GGGATTGACAGTACTTTAGATGCAGCAAATATTTTAAAACCTGCTTTATCACGTGGAACGCTCCATATGGTAGGTGCGAC
AACACAAGAAGAGTATCAAAAACATATTGAAAAAGATGCAGCTTTATCTCGTCGTTTTGCGAAAGTGCTTATCGAAGAAC
CAAATTTGGAAGATGCTTATCAAATTTTGTTAGGACTAAAAGGATCTTATGAACGTTTCCATAATGTTTCAATTTCAGAC
CAAGCTGTCAAGACGGCTGTTAAGGTAGCTCATCGCTATTTAACCAGTAAAAATCTTCCTGATTCAGCCATTGACTTATT
AGATGAAGCAAGTGCAACGGTTCAAGGGTTAGTCAAAAAAGAAAAAGCTTCCATCTTAACACCAATTGATCAAGCAATTC
TAGAGAAGGATTTCAAAACAGTTTCAAAACTATTGAAAGCTCAAGTTAATAACAAATCTGCAAAGCCTACACTAGTGACT
GAAGATAATATCATGTCTACACTAAGCAAGTTATCAGGAATTCCTGTTGAAAAACTAACCCAAGCAGATAGCAAAAAATA
TCTTAACTTGGAAAAAGAATTGCATAAGCGTGTGATTGGTCAAGAAGATGCTGTATCAGCAATATCACGGGCAATTCGTC
GCAATCAGTCAGGAATTAGAACAGGCAGACGACCTATTGGTTCATTCATGTTCTTAGGGCCAACGGGAGTTGGTAAAACA
GAATTAGCAAAAGCTTTAGCAGAAGTTCTCTTTGATGATGAGTCAGCACTAATTCGATTCGATATGTCCGAGTATATGGA
AAAATTTGCAGCTAGTCGATTAAATGGGGCACCTCCAGGCTATGTCGGCTATGAAGAAGGTGGCGAACTGACAGAAAAGG
TTAGAAATAAACCTTATTCTGTTCTACTATTTGATGAAGTTGAAAAAGCCCATCCGGATATCTTTAATGTCCTATTGCAA
GTTCTAGATGATGGGATGTTAACAGACAGTCGCGGGCGTCGCGTTGATTTCTCAAACACCATTATTATTATGACTAGTAA
CTTGGGCGCGACGGCCTTACGTGATGATAAAACAGTTGGTTTTGGTGCCAAAGATATTTCTCAAGACCACCAAGCCATGG
AAAAACGAATTTTGGAAGAATTGAAGAAATCCTACAGACCAGAATTCATTAACAGGATAGATGAGAAGGTAGTCTTCCAT
AGCCTCAGTCAAGAGGATATGAAAGAAGTAGTGATGATTATGGTTAAACCATTAGTTACTAATTTGGCGGAAAAAGGCGT
TAGTCTGAAAATTCAACCATCGGCCCTCAACTATCTCTCAGAGGAAGGCTATGATGTGGAGATGGGGGCAAGACCACTCC
GAAGAACGCTACAAACGCATATTGAAGATAAACTGTCAGAATTGATTCTTTCTGGCGACTTATCTAGTGGACACCAGTTG
AAAATAGGAATGTCCCATGGCAAATTAAAATTTGACATAGAATAA

Domains

Predicted by InterproScan.

C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small)

(722-801)

ATPase family associated with various cellular activities (AAA) (AAA)

(236-368)

AAA lid domain (AAA_lid_9)

(376-453)

AAA domain (Cdc48 subfamily) (AAA_2)

(544-715)

Clp amino terminal domain, pathogenicity island component (Clp_N)

(18-51)

Clp amino terminal domain, pathogenicity island component (Clp_N)

(105-136)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpC Streptococcus mutans UA159

74.293

99.877

0.742
  clpC Streptococcus thermophilus LMD-9

71.394

100

0.717
  clpC Streptococcus thermophilus LMG 18311

71.394

100

0.717
  clpC Streptococcus pneumoniae Rx1

66.871

100

0.67
  clpC Streptococcus pneumoniae D39

66.871

100

0.67
  clpC Streptococcus pneumoniae TIGR4

66.748

100

0.668
  clpC Lactococcus lactis subsp. lactis strain DGCC12653

48.139

100

0.493
  clpC Bacillus subtilis subsp. subtilis str. 168

44.922

100

0.462

Multiple sequence alignment