Detailed information NTG1063996

Bioinformatically predicted

Overview

• Name: clpC
• Type: Regulator
• Locus tag: ACG3JE_RS09175
• Genome accession: NZ_CP171736
• Coordinates: 1810317..1812761 (-)
• Length: 814 a.a.
• NCBI ID: WP_013794487.1
• Uniprot ID: -
• Organism: Streptococcus parauberis strain DB-M17
• Function: degradation of ComX (predicted from homology) Competence regulation

Genomic Context

Location: 1805317..1817761

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACG3JE_RS09150 (ACG3JE_09150)	-	1805693..1807471 (-)	1779	WP_259966522.1	G5 domain-containing protein	-
ACG3JE_RS09155 (ACG3JE_09155)	-	1807392..1807571 (-)	180	WP_238570148.1	hypothetical protein	-
ACG3JE_RS09160 (ACG3JE_09160)	-	1807528..1808022 (-)	495	WP_003107821.1	YSIRK-type signal peptide-containing protein	-
ACG3JE_RS09165 (ACG3JE_09165)	groL	1808172..1809800 (-)	1629	WP_003107822.1	chaperonin GroEL	-
ACG3JE_RS09170 (ACG3JE_09170)	groES	1809838..1810122 (-)	285	WP_003105909.1	co-chaperone GroES	-
ACG3JE_RS09175 (ACG3JE_09175)	clpC	1810317..1812761 (-)	2445	WP_013794487.1	ATP-dependent Clp protease ATP-binding subunit	Regulator
ACG3JE_RS09180 (ACG3JE_09180)	-	1812754..1813221 (-)	468	WP_003103836.1	CtsR family transcriptional regulator	-
ACG3JE_RS09185 (ACG3JE_09185)	-	1813399..1813599 (-)	201	WP_003104168.1	cold-shock protein	-
ACG3JE_RS09190 (ACG3JE_09190)	-	1813928..1814197 (+)	270	WP_394714020.1	hypothetical protein	-
ACG3JE_RS09195 (ACG3JE_09195)	-	1814199..1816270 (+)	2072	Protein_1786	cation:proton antiporter	-
ACG3JE_RS09200 (ACG3JE_09200)	-	1816373..1817332 (+)	960	WP_003107825.1	VOC family protein	-

Sequence

Protein

• Length: 814 a.a.
• Molecular weight: 90227.56 Da
• Isoelectric Point: 6.0116

>NTDB_id=1063996 ACG3JE_RS09175 WP_013794487.1 1810317..1812761(-) (clpC) [Streptococcus parauberis strain DB-M17]
MIDYSIKMQEIFKQAQYQAARFGSSHLETWHILLAMVKEEGSLAGLVFSEFNNKISEEEYEAAAILAVGKSPQDDIKEVH
FLGQSKTLTNILKFSEMISLVTNASEVGSEHVLFAILLNPDIMAARLLEMAGFKIKDDGQGQPKLADLRKAIEIQAAYSK
ETIKAIHELRKPKKAKGAGSFSDMMKPASTAGDLSDFTRDLTEMANQGLLEPVIGRDKEITRMIQVLSRKTKNNPVLVGD
AGVGKTALAYGLAQRIANGSIPYELQDMRVLELDMMSVVAGTRFRGDFEERMNQIIDDIETDGQIILFVDELHTIMGSGS
GIDSTLDAANILKPALSRGTLHMVGATTQEEYQKHIEKDAALSRRFAKVLIEEPNLEDAYQILLGLKGSYERFHNVSISD
QAVKTAVKVAHRYLTSKNLPDSAIDLLDEASATVQGLVKKEKASILTPIDQAILEKDFKTVSKLLKAQVNNKSAKPTLVT
EDNIMSTLSKLSGIPVEKLTQADSKKYLNLEKELHKRVIGQEDAVSAISRAIRRNQSGIRTGRRPIGSFMFLGPTGVGKT
ELAKALAEVLFDDESALIRFDMSEYMEKFAASRLNGAPPGYVGYEEGGELTEKVRNKPYSVLLFDEVEKAHPDIFNVLLQ
VLDDGMLTDSRGRRVDFSNTIIIMTSNLGATALRDDKTVGFGAKDISQDHQAMEKRILEELKKSYRPEFINRIDEKVVFH
SLSQEDMKEVVMIMVKPLVTNLAEKGVSLKIQPSALNYLSEEGYDVEMGARPLRRTLQTHIEDKLSELILSGDLSSGHQL
KIGMSHGKLKFDIE

Nucleotide

• Length: 2445 bp

>NTDB_id=1063996 ACG3JE_RS09175 WP_013794487.1 1810317..1812761(-) (clpC) [Streptococcus parauberis strain DB-M17]
ATGATTGATTACTCAATAAAGATGCAAGAGATATTTAAACAGGCCCAGTACCAAGCAGCTCGCTTTGGCAGTTCGCATTT
GGAGACCTGGCATATTCTCTTAGCAATGGTGAAAGAAGAAGGTTCCCTAGCAGGATTAGTTTTTAGTGAATTTAATAATA
AAATTTCAGAAGAAGAATATGAAGCAGCTGCAATTTTGGCCGTGGGAAAAAGTCCTCAAGATGATATTAAAGAAGTGCAT
TTCTTAGGTCAGTCCAAGACTTTAACCAATATTCTTAAGTTTTCTGAAATGATAAGTTTGGTTACAAATGCTTCTGAAGT
AGGTTCAGAGCATGTTCTTTTTGCAATTTTGTTAAATCCAGATATTATGGCTGCCCGACTCTTAGAGATGGCTGGCTTCA
AAATTAAGGATGATGGACAAGGACAACCAAAGCTTGCTGATCTCAGAAAAGCTATTGAAATACAGGCGGCATATAGTAAA
GAAACAATTAAAGCTATTCATGAGTTACGAAAACCTAAAAAAGCCAAAGGTGCTGGATCTTTTTCTGACATGATGAAGCC
GGCTAGTACAGCTGGAGACTTGTCAGATTTCACCAGAGACCTAACGGAAATGGCCAACCAAGGACTATTAGAACCAGTTA
TCGGCAGAGATAAAGAAATCACACGGATGATTCAGGTTCTCAGTCGTAAAACCAAGAACAATCCTGTACTAGTTGGAGAT
GCTGGTGTTGGTAAGACAGCCTTAGCTTATGGACTAGCTCAACGGATTGCCAATGGATCAATTCCTTATGAATTGCAAGA
TATGCGGGTCTTGGAATTAGATATGATGAGTGTTGTTGCGGGTACACGTTTCCGTGGGGACTTCGAAGAAAGAATGAATC
AAATCATCGACGATATTGAGACGGATGGTCAGATTATTCTTTTTGTTGATGAACTACATACAATCATGGGTTCTGGTAGT
GGGATTGACAGTACTTTAGATGCAGCAAATATTTTAAAACCTGCTTTATCACGTGGAACGCTCCATATGGTAGGTGCGAC
AACACAAGAAGAGTATCAAAAACATATTGAAAAAGATGCAGCTTTATCTCGTCGTTTTGCGAAAGTGCTTATCGAAGAAC
CAAATTTGGAAGATGCTTATCAAATTTTGTTAGGACTAAAAGGATCTTATGAACGTTTCCATAATGTTTCAATTTCAGAC
CAAGCTGTCAAGACGGCTGTTAAGGTAGCTCATCGCTATTTAACCAGTAAAAATCTTCCTGATTCAGCCATTGACTTATT
AGATGAAGCAAGTGCAACGGTTCAAGGGTTAGTCAAAAAAGAAAAAGCTTCCATCTTAACACCAATTGATCAAGCAATTC
TAGAGAAGGATTTCAAAACAGTTTCAAAACTATTGAAAGCTCAAGTTAATAACAAATCTGCAAAGCCTACACTAGTGACT
GAAGATAATATCATGTCTACACTAAGCAAGTTATCAGGAATTCCTGTTGAAAAACTAACCCAAGCAGATAGCAAAAAATA
TCTTAACTTGGAAAAAGAATTGCATAAGCGTGTGATTGGTCAAGAAGATGCTGTATCAGCAATATCACGGGCAATTCGTC
GCAATCAGTCAGGAATTAGAACAGGCAGACGACCTATTGGTTCATTCATGTTCTTAGGGCCAACGGGAGTTGGTAAAACA
GAATTAGCAAAAGCTTTAGCAGAAGTTCTCTTTGATGATGAGTCAGCACTAATTCGATTCGATATGTCCGAGTATATGGA
AAAATTTGCAGCTAGTCGATTAAATGGGGCACCTCCAGGCTATGTCGGCTATGAAGAAGGTGGCGAACTGACAGAAAAGG
TTAGAAATAAACCTTATTCTGTTCTACTATTTGATGAAGTTGAAAAAGCCCATCCGGATATCTTTAATGTCCTATTGCAA
GTTCTAGATGATGGGATGTTAACAGACAGTCGCGGGCGTCGCGTTGATTTCTCAAACACCATTATTATTATGACTAGTAA
CTTGGGCGCGACGGCCTTACGTGATGATAAAACAGTTGGTTTTGGTGCCAAAGATATTTCTCAAGACCACCAAGCCATGG
AAAAACGAATTTTGGAAGAATTGAAGAAATCCTACAGACCAGAATTCATTAACAGGATAGATGAGAAGGTAGTCTTCCAT
AGCCTCAGTCAAGAGGATATGAAAGAAGTAGTGATGATTATGGTTAAACCATTAGTTACTAATTTGGCGGAAAAAGGCGT
TAGTCTGAAAATTCAACCATCGGCCCTCAACTATCTCTCAGAGGAAGGCTATGATGTGGAGATGGGGGCAAGACCACTCC
GAAGAACGCTACAAACGCATATTGAAGATAAACTGTCAGAATTGATTCTTTCTGGCGACTTATCTAGTGGACACCAGTTG
AAAATAGGAATGTCCCATGGCAAATTAAAATTTGACATAGAATAA

Domains

Predicted by InterproScan.

• C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small) (722-801)

• ATPase family associated with various cellular activities (AAA) (AAA) (236-368)

• AAA lid domain (AAA_lid_9) (376-453)

• AAA domain (Cdc48 subfamily) (AAA_2) (544-715)

• Clp amino terminal domain, pathogenicity island component (Clp_N) (18-51)

• Clp amino terminal domain, pathogenicity island component (Clp_N) (105-136)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpC	Streptococcus mutans UA159	74.293	99.877	0.742
clpC	Streptococcus thermophilus LMD-9	71.394	100	0.717
clpC	Streptococcus thermophilus LMG 18311	71.394	100	0.717
clpC	Streptococcus pneumoniae Rx1	66.871	100	0.67
clpC	Streptococcus pneumoniae D39	66.871	100	0.67
clpC	Streptococcus pneumoniae TIGR4	66.748	100	0.668
clpC	Lactococcus lactis subsp. lactis strain DGCC12653	48.139	100	0.493
clpC	Bacillus subtilis subsp. subtilis str. 168	44.922	100	0.462