Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0J   Type   Regulator
Locus tag   ACG3JM_RS08340 Genome accession   NZ_CP171735
Coordinates   1666632..1667405 (+) Length   257 a.a.
NCBI ID   WP_045407580.1    Uniprot ID   -
Organism   Streptococcus parauberis strain DB-M11     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1661632..1672405
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACG3JM_RS08330 (ACG3JM_08330) rlmH 1664665..1665144 (-) 480 WP_013794545.1 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH -
  ACG3JM_RS08335 (ACG3JM_08335) htrA 1665348..1666556 (+) 1209 WP_003108843.1 S1C family serine protease Regulator
  ACG3JM_RS08340 (ACG3JM_08340) spo0J 1666632..1667405 (+) 774 WP_045407580.1 ParB/RepB/Spo0J family partition protein Regulator
  ACG3JM_RS08345 (ACG3JM_08345) dnaA 1667642..1669003 (+) 1362 WP_003107956.1 chromosomal replication initiator protein DnaA -
  ACG3JM_RS08350 (ACG3JM_08350) dnaN 1669159..1670295 (+) 1137 WP_003103000.1 DNA polymerase III subunit beta -
  ACG3JM_RS08355 (ACG3JM_08355) - 1670366..1670563 (+) 198 WP_003104619.1 DUF951 domain-containing protein -
  ACG3JM_RS08360 (ACG3JM_08360) - 1670684..1671052 (+) 369 WP_003107958.1 helix-turn-helix domain-containing protein -
  ACG3JM_RS08365 (ACG3JM_08365) ychF 1671157..1672272 (+) 1116 WP_003103347.1 redox-regulated ATPase YchF -

Sequence

Protein


Download         Length: 257 a.a.        Molecular weight: 29261.88 Da        Isoelectric Point: 10.1648

>NTDB_id=1063946 ACG3JM_RS08340 WP_045407580.1 1666632..1667405(+) (spo0J) [Streptococcus parauberis strain DB-M11]
MTEHLKTIPIADIVANPYQPRLSFDTKELMELAHSIKMNGLIQPIIVRKSDIFGYELIAGERRLRASQLAGLTTIPAVIK
DISNKDSMHQAIVENLQRSNLNPIEEAKAFQNILEKEEMTHDELAQYMGKSRPYISNSLRLLQLPKSIKEAIEKHHISSG
HARALLAVTSKKEQENYFKQIISQNLSVRQTENLVKKKTNKKLSKIEKDIFNQAIENELAKSLGLPIQLHKKNDGTGHIK
LTFSNTEELNRIINKLK

Nucleotide


Download         Length: 774 bp        

>NTDB_id=1063946 ACG3JM_RS08340 WP_045407580.1 1666632..1667405(+) (spo0J) [Streptococcus parauberis strain DB-M11]
ATGACTGAACATTTAAAAACAATTCCAATTGCTGATATTGTAGCTAATCCTTATCAACCTCGTTTAAGTTTTGATACTAA
AGAATTAATGGAATTGGCTCATTCTATTAAAATGAATGGCTTAATACAACCTATTATAGTAAGAAAATCGGATATCTTTG
GTTATGAGTTAATAGCAGGTGAAAGAAGACTGAGAGCTTCACAATTAGCTGGTCTAACTACCATTCCCGCAGTTATCAAA
GATATTTCAAATAAAGATAGTATGCATCAAGCGATTGTTGAAAATTTACAACGGTCTAATTTGAATCCAATTGAAGAAGC
AAAAGCTTTTCAAAATATACTTGAAAAAGAGGAAATGACCCATGATGAACTAGCGCAGTATATGGGCAAATCTCGTCCGT
ATATTAGTAATAGTCTAAGGCTGCTACAATTACCAAAATCAATTAAGGAAGCCATTGAAAAACATCACATTTCCTCAGGG
CATGCGCGTGCTTTATTAGCTGTAACCAGTAAAAAAGAGCAAGAAAATTATTTTAAACAAATTATTAGTCAGAATTTGAG
TGTTCGACAAACTGAAAATTTAGTAAAAAAGAAAACAAATAAAAAACTAAGTAAAATAGAAAAAGACATTTTTAATCAAG
CTATTGAAAATGAGTTAGCAAAAAGCCTTGGTTTACCAATCCAATTACATAAAAAAAACGATGGAACTGGTCACATCAAA
TTAACTTTTTCAAATACTGAAGAATTAAACAGAATTATCAACAAGCTAAAATAA

Domains

Predicted by InterproScan.

ParB/Sulfiredoxin domain (ParB_N)

(7-95)

HTH domain found in ParB protein (HTH_ParB)

(147-197)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0J Streptococcus mutans UA159

58.594

99.611

0.584

Multiple sequence alignment