Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   ACG3JJ_RS05455 Genome accession   NZ_CP171733
Coordinates   1059382..1061184 (+) Length   600 a.a.
NCBI ID   WP_013794133.1    Uniprot ID   -
Organism   Streptococcus parauberis strain DB-M5     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1054382..1066184
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACG3JJ_RS05430 (ACG3JJ_05430) queA 1054387..1055415 (-) 1029 WP_045407077.1 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA -
  ACG3JJ_RS05435 (ACG3JJ_05435) nagB 1055607..1056311 (+) 705 WP_013794136.1 glucosamine-6-phosphate deaminase -
  ACG3JJ_RS05440 (ACG3JJ_05440) - 1056389..1057105 (+) 717 WP_003107266.1 pseudouridine synthase -
  ACG3JJ_RS05445 (ACG3JJ_05445) - 1057205..1058350 (+) 1146 WP_003102523.1 MFS transporter -
  ACG3JJ_RS05450 (ACG3JJ_05450) - 1058421..1059356 (+) 936 WP_013794134.1 competence protein CoiA -
  ACG3JJ_RS05455 (ACG3JJ_05455) pepF 1059382..1061184 (+) 1803 WP_013794133.1 oligoendopeptidase F Regulator
  ACG3JJ_RS05460 (ACG3JJ_05460) - 1061355..1061993 (+) 639 WP_003107261.1 HAD family phosphatase -
  ACG3JJ_RS05465 (ACG3JJ_05465) - 1062127..1063368 (+) 1242 WP_003107259.1 OFA family MFS transporter -
  ACG3JJ_RS05470 (ACG3JJ_05470) - 1063382..1064032 (+) 651 WP_003108204.1 HAD family hydrolase -
  ACG3JJ_RS05475 (ACG3JJ_05475) - 1064433..1065005 (+) 573 Protein_1032 ECF transporter S component -
  ACG3JJ_RS05480 (ACG3JJ_05480) - 1065257..1065379 (+) 123 WP_003104426.1 hypothetical protein -
  ACG3JJ_RS05485 (ACG3JJ_05485) - 1065364..1065618 (+) 255 WP_231070381.1 hypothetical protein -

Sequence

Protein


Download         Length: 600 a.a.        Molecular weight: 69620.57 Da        Isoelectric Point: 4.6480

>NTDB_id=1063832 ACG3JJ_RS05455 WP_013794133.1 1059382..1061184(+) (pepF) [Streptococcus parauberis strain DB-M5]
MIDNRSHLDEKYTWDLSTIFKTDEEFETELKVLNQDTNAAQKYAGHLLDSSKMLFEITNSQLELARRIEKVYVYASMKND
QDTTVAKYQEYQAKASSLYAKFGQVFSFYEPEFMSMSTEQLDTFKAEESQLELYNHYFEKLLKYKEHVLSQREEELLAGA
QEIFNGAEETFSILDNADLIFPIVKDDNGKEVEITHGNFISLMESKDRNVRKAAYEAMYCTYEQFQHTYAKTLQTNVKVQ
NYQARVHKYDSARQAAMSANFIPEAVYDTLLSSVNKHLPLLHRYLKLRQEVLGLDELKMYDVYTPLSETNLDMTYDEAIE
KVQTVLEVFGKEYSDRVNRAFTERWIDVHVNKGKRSGAYSGGSYDTNAFMLLNWQDNLDNLYTLIHETGHSLHSTLTREN
QPYVYGDYSIFLAEIASTTNENILTEALLKEVADDKTRFAILNNYLDGFRGSVFRQTQFAEFEHAIHQADQNGEVLTSEY
INNLYAELNQKYYGLAKEDNHFIQYEWARIPHFYYNYYVYQYSTGFAAASYLANKIVHGSQEDIDAYLSYLKAGNSDYPL
EVIAKAGVDMTQEDYLDQAFAVFEARLTELEELVAKGAHK

Nucleotide


Download         Length: 1803 bp        

>NTDB_id=1063832 ACG3JJ_RS05455 WP_013794133.1 1059382..1061184(+) (pepF) [Streptococcus parauberis strain DB-M5]
ATGATAGACAATCGTAGTCATTTAGATGAAAAGTACACTTGGGATTTAAGTACAATTTTCAAAACAGATGAAGAATTTGA
AACTGAACTAAAGGTCTTAAATCAGGATACTAATGCAGCGCAAAAATATGCTGGTCATTTATTAGATTCAAGTAAAATGT
TGTTTGAAATTACGAATAGTCAGCTTGAATTGGCGCGTCGCATTGAAAAAGTCTATGTTTATGCATCAATGAAAAACGAT
CAAGATACTACCGTAGCCAAATATCAAGAGTATCAAGCAAAAGCATCTAGTTTATATGCAAAATTTGGGCAAGTTTTCTC
ATTTTATGAGCCTGAATTTATGAGCATGTCAACTGAACAATTAGATACTTTTAAAGCTGAAGAAAGTCAATTGGAACTTT
ACAATCACTACTTTGAAAAATTATTAAAATATAAAGAGCATGTTTTGTCTCAACGTGAGGAAGAACTTTTAGCTGGTGCA
CAAGAAATCTTTAATGGGGCAGAAGAAACATTTAGTATTTTGGATAATGCCGATTTGATATTCCCAATTGTGAAAGATGA
TAATGGTAAGGAAGTTGAAATCACACATGGTAACTTTATCAGTTTGATGGAATCAAAAGATCGTAATGTGCGCAAAGCTG
CTTATGAAGCAATGTATTGTACTTATGAACAATTTCAACATACTTACGCCAAAACACTTCAAACAAATGTAAAAGTACAA
AACTATCAAGCGCGTGTTCATAAATATGACTCTGCTCGCCAAGCAGCAATGTCTGCAAATTTCATTCCTGAAGCAGTTTA
TGACACTTTACTTTCATCAGTAAATAAACATTTACCATTATTACATCGTTACTTGAAATTAAGACAAGAAGTTCTTGGTT
TGGATGAACTTAAAATGTATGATGTTTATACACCATTATCTGAGACAAATCTTGATATGACATATGATGAAGCAATTGAG
AAAGTACAAACTGTTTTAGAAGTGTTTGGTAAGGAATATTCAGACCGAGTAAATCGTGCATTCACAGAACGTTGGATTGA
TGTTCATGTTAATAAAGGTAAACGTTCAGGTGCCTATTCAGGTGGATCATATGATACAAATGCATTTATGCTACTTAACT
GGCAAGATAATCTTGATAACCTTTATACACTGATTCATGAAACTGGCCACAGCCTACATTCAACTTTAACTAGAGAAAAT
CAACCATATGTTTATGGTGATTATAGTATCTTCTTGGCAGAAATTGCGTCGACAACAAATGAAAATATTTTAACTGAAGC
TCTCTTGAAAGAAGTAGCTGATGATAAAACTCGTTTTGCCATTTTAAATAATTATTTGGATGGCTTTAGAGGTTCTGTTT
TCCGTCAAACTCAATTTGCTGAGTTTGAGCATGCGATTCACCAAGCTGATCAAAATGGTGAAGTCTTAACAAGTGAATAC
ATTAATAATTTATACGCCGAACTTAATCAAAAATATTATGGACTAGCTAAAGAAGATAATCATTTTATTCAATATGAGTG
GGCTAGAATTCCACATTTCTACTATAATTATTATGTTTATCAATACTCAACTGGTTTTGCTGCGGCAAGCTATTTAGCAA
ATAAAATTGTCCATGGAAGTCAAGAAGATATTGATGCTTATCTGTCATATTTGAAAGCAGGAAATTCTGATTACCCATTA
GAAGTCATTGCCAAAGCAGGTGTTGATATGACTCAAGAAGACTACTTGGATCAAGCATTCGCTGTTTTTGAAGCACGATT
AACTGAATTAGAAGAATTAGTTGCTAAAGGCGCGCACAAATAA

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(112-181)

Peptidase family M3 (Peptidase_M3)

(202-581)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

71.285

99.833

0.712

Multiple sequence alignment