Detailed information    

insolico Bioinformatically predicted

Overview

Name   treR   Type   Regulator
Locus tag   ACG3JF_RS05930 Genome accession   NZ_CP171732
Coordinates   1214384..1215097 (+) Length   237 a.a.
NCBI ID   WP_037620338.1    Uniprot ID   -
Organism   Streptococcus parauberis strain DB-M3     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1209384..1220097
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACG3JF_RS05920 (ACG3JF_05920) treC 1210484..1212109 (-) 1626 WP_003105838.1 alpha,alpha-phosphotrehalase -
  ACG3JF_RS05925 (ACG3JF_05925) treP 1212177..1214162 (-) 1986 WP_013794496.1 PTS system trehalose-specific EIIBC component -
  ACG3JF_RS05930 (ACG3JF_05930) treR 1214384..1215097 (+) 714 WP_037620338.1 trehalose operon repressor Regulator
  ACG3JF_RS05935 (ACG3JF_05935) - 1215121..1215447 (-) 327 WP_003107849.1 helix-turn-helix domain-containing protein -
  ACG3JF_RS05940 (ACG3JF_05940) - 1215649..1216503 (+) 855 WP_003108943.1 VOC family protein -
  ACG3JF_RS05945 (ACG3JF_05945) yaaA 1216556..1217287 (+) 732 WP_003108941.1 peroxide stress protein YaaA -
  ACG3JF_RS05950 (ACG3JF_05950) nrdG 1217405..1218019 (-) 615 WP_003104313.1 anaerobic ribonucleoside-triphosphate reductase activating protein -
  ACG3JF_RS05955 (ACG3JF_05955) - 1218034..1218528 (-) 495 WP_003108940.1 GNAT family N-acetyltransferase -
  ACG3JF_RS05960 (ACG3JF_05960) - 1218509..1219471 (-) 963 WP_013794498.1 Gfo/Idh/MocA family protein -
  ACG3JF_RS05965 (ACG3JF_05965) - 1219495..1219644 (-) 150 WP_003108936.1 hypothetical protein -

Sequence

Protein


Download         Length: 237 a.a.        Molecular weight: 27687.92 Da        Isoelectric Point: 8.0440

>NTDB_id=1063777 ACG3JF_RS05930 WP_037620338.1 1214384..1215097(+) (treR) [Streptococcus parauberis strain DB-M3]
MKKYERIFKDLEEKIAKEIYAIDDFLPTEIELCKEYDASRDTIRKSLNLLAKAGLVKSQQGRGTQVIKHHQILFPISELT
SYHELVSYFNMDSKTNVIAIDKLIVDKYVSKLTGFKENTIIWRITRQRVVDGVASVLDIDYLNKDIVPTISREIAEVSLY
QYLEKELHLPIDFALKEVTIDQINDRDKILLDLGSDKHVVSVKSKVYLSNNEQFQFTESRHKLEKFKFVDFARRNPK

Nucleotide


Download         Length: 714 bp        

>NTDB_id=1063777 ACG3JF_RS05930 WP_037620338.1 1214384..1215097(+) (treR) [Streptococcus parauberis strain DB-M3]
ATGAAAAAATATGAACGCATTTTCAAAGATTTAGAAGAAAAAATTGCCAAAGAAATTTATGCTATTGATGACTTTTTACC
AACTGAAATTGAACTCTGTAAAGAGTATGATGCAAGTAGAGATACTATTCGTAAGTCACTGAACCTTCTAGCGAAAGCTG
GACTAGTTAAAAGCCAACAAGGTCGTGGAACTCAAGTCATCAAACACCATCAAATATTATTCCCCATTTCTGAATTAACG
AGTTATCATGAGTTAGTTTCCTACTTCAATATGGATTCGAAAACAAATGTTATTGCTATTGATAAATTAATTGTAGACAA
ATATGTTTCAAAATTAACTGGCTTCAAAGAAAATACAATTATCTGGCGAATCACCCGTCAGCGTGTTGTTGATGGCGTTG
CCTCAGTTTTAGACATTGATTACTTGAATAAGGATATAGTCCCTACAATCTCAAGAGAAATTGCTGAAGTATCACTTTAT
CAATATTTGGAGAAAGAACTCCACTTACCAATTGATTTTGCCTTAAAAGAAGTTACAATTGACCAAATCAATGATCGGGA
TAAAATTTTACTAGATTTAGGATCTGACAAACATGTTGTCTCTGTGAAATCAAAAGTCTATTTGTCAAATAATGAACAAT
TCCAATTTACAGAAAGCCGGCATAAATTAGAAAAATTCAAATTTGTTGACTTTGCCAGACGAAATCCAAAATAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, gntR family (GntR)

(3-66)

UTRA domain (UTRA)

(92-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  treR Streptococcus mutans UA159

64.681

99.156

0.641

Multiple sequence alignment