Detailed information    

insolico Bioinformatically predicted

Overview

Name   treR   Type   Regulator
Locus tag   ACG3JH_RS08260 Genome accession   NZ_CP171731
Coordinates   1596899..1597612 (-) Length   237 a.a.
NCBI ID   WP_037620338.1    Uniprot ID   -
Organism   Streptococcus parauberis strain DB-M1     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1591899..1602612
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACG3JH_RS08225 (ACG3JH_08225) - 1592352..1592501 (+) 150 WP_003108936.1 hypothetical protein -
  ACG3JH_RS08230 (ACG3JH_08230) - 1592525..1593487 (+) 963 WP_013794498.1 Gfo/Idh/MocA family protein -
  ACG3JH_RS08235 (ACG3JH_08235) - 1593468..1593962 (+) 495 WP_003108940.1 GNAT family N-acetyltransferase -
  ACG3JH_RS08240 (ACG3JH_08240) nrdG 1593977..1594591 (+) 615 WP_003104313.1 anaerobic ribonucleoside-triphosphate reductase activating protein -
  ACG3JH_RS08245 (ACG3JH_08245) yaaA 1594709..1595440 (-) 732 WP_003108941.1 peroxide stress protein YaaA -
  ACG3JH_RS08250 (ACG3JH_08250) - 1595493..1596347 (-) 855 WP_003108943.1 VOC family protein -
  ACG3JH_RS08255 (ACG3JH_08255) - 1596549..1596875 (+) 327 WP_003107849.1 helix-turn-helix domain-containing protein -
  ACG3JH_RS08260 (ACG3JH_08260) treR 1596899..1597612 (-) 714 WP_037620338.1 trehalose operon repressor Regulator
  ACG3JH_RS08265 (ACG3JH_08265) treP 1597834..1599819 (+) 1986 WP_013794496.1 PTS system trehalose-specific EIIBC component -
  ACG3JH_RS08270 (ACG3JH_08270) treC 1599887..1601512 (+) 1626 WP_003105838.1 alpha,alpha-phosphotrehalase -

Sequence

Protein


Download         Length: 237 a.a.        Molecular weight: 27687.92 Da        Isoelectric Point: 8.0440

>NTDB_id=1063744 ACG3JH_RS08260 WP_037620338.1 1596899..1597612(-) (treR) [Streptococcus parauberis strain DB-M1]
MKKYERIFKDLEEKIAKEIYAIDDFLPTEIELCKEYDASRDTIRKSLNLLAKAGLVKSQQGRGTQVIKHHQILFPISELT
SYHELVSYFNMDSKTNVIAIDKLIVDKYVSKLTGFKENTIIWRITRQRVVDGVASVLDIDYLNKDIVPTISREIAEVSLY
QYLEKELHLPIDFALKEVTIDQINDRDKILLDLGSDKHVVSVKSKVYLSNNEQFQFTESRHKLEKFKFVDFARRNPK

Nucleotide


Download         Length: 714 bp        

>NTDB_id=1063744 ACG3JH_RS08260 WP_037620338.1 1596899..1597612(-) (treR) [Streptococcus parauberis strain DB-M1]
ATGAAAAAATATGAACGCATTTTCAAAGATTTAGAAGAAAAAATTGCCAAAGAAATTTATGCTATTGATGACTTTTTACC
AACTGAAATTGAACTCTGTAAAGAGTATGATGCAAGTAGAGATACTATTCGTAAGTCACTGAACCTTCTAGCGAAAGCTG
GACTAGTTAAAAGCCAACAAGGTCGTGGAACTCAAGTCATCAAACACCATCAAATATTATTCCCCATTTCTGAATTAACG
AGTTATCATGAGTTAGTTTCCTACTTCAATATGGATTCGAAAACAAATGTTATTGCTATTGATAAATTAATTGTAGACAA
ATATGTTTCAAAATTAACTGGCTTCAAAGAAAATACAATTATCTGGCGAATCACCCGTCAGCGTGTTGTTGATGGCGTTG
CCTCAGTTTTAGACATTGATTACTTGAATAAGGATATAGTCCCTACAATCTCAAGAGAAATTGCTGAAGTATCACTTTAT
CAATATTTGGAGAAAGAACTCCACTTACCAATTGATTTTGCCTTAAAAGAAGTTACAATTGACCAAATCAATGATCGGGA
TAAAATTTTACTAGATTTAGGATCTGACAAACATGTTGTCTCTGTGAAATCAAAAGTCTATTTGTCAAATAATGAACAAT
TCCAATTTACAGAAAGCCGGCATAAATTAGAAAAATTCAAATTTGTTGACTTTGCCAGACGAAATCCAAAATAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, gntR family (GntR)

(3-66)

UTRA domain (UTRA)

(92-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  treR Streptococcus mutans UA159

64.681

99.156

0.641

Multiple sequence alignment