Detailed information NTG0106351

Bioinformatically predicted

Overview

• Name: cytR
• Type: Regulator
• Locus tag: DP32_RS22830
• Genome accession: NZ_CP007594
• Coordinates: 4545938..4546963 (-)
• Length: 341 a.a.
• NCBI ID: WP_000644904.1
• Uniprot ID: P0ACN8
• Organism: Escherichia coli strain SEC470
• Function: promote competence gene expression (predicted from homology) Competence regulation

Genomic Context

Location: 4540938..4551963

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
DP32_RS22800 (DP32_22830)	zapB	4541022..4541267 (+)	246	WP_001296623.1	septal ring assembly protein ZapB	-
DP32_RS22805 (DP32_22835)	rraA	4541352..4541837 (-)	486	WP_000872908.1	ribonuclease E activity regulator RraA	-
DP32_RS22810 (DP32_22840)	menA	4541930..4542856 (-)	927	WP_000139496.1	1,4-dihydroxy-2-naphthoate polyprenyltransferase	-
DP32_RS22815 (DP32_22845)	hslU	4542923..4544254 (-)	1332	WP_001293341.1	HslU--HslV peptidase ATPase subunit	-
DP32_RS22820 (DP32_22850)	hslV	4544264..4544794 (-)	531	WP_000208242.1	ATP-dependent protease subunit HslV	-
DP32_RS22825 (DP32_22855)	ftsN	4544887..4545846 (-)	960	WP_000068828.1	cell division protein FtsN	-
DP32_RS22830 (DP32_22860)	cytR	4545938..4546963 (-)	1026	WP_000644904.1	DNA-binding transcriptional regulator CytR	Regulator
DP32_RS22835 (DP32_22865)	priA	4547119..4549317 (-)	2199	WP_001300388.1	primosomal protein N'	Machinery gene
DP32_RS22840 (DP32_22870)	rpmE	4549520..4549732 (+)	213	WP_000710769.1	50S ribosomal protein L31	-
DP32_RS22845 (DP32_22875)	yiiX	4549793..4550401 (-)	609	WP_000797353.1	YiiX family permuted papain-like enzyme	-
DP32_RS22850 (DP32_22880)	metJ	4550585..4550902 (-)	318	WP_000852812.1	met regulon transcriptional regulator MetJ	-

Sequence

Protein

• Length: 341 a.a.
• Molecular weight: 37819.78 Da
• Isoelectric Point: 6.3842

>NTDB_id=106351 DP32_RS22830 WP_000644904.1 4545938..4546963(-) (cytR) [Escherichia coli strain SEC470]
MKAKKQETAATMKDVALKAKVSTATVSRALMNPDKVSQATRNRVEKAAREVGYLPQPMGRNVKRNESRTILVIVPDICDP
FFSEIIRGIEVTAANHGYLVLIGDCAHQNQQEKTFIDLIITKQIDGMLLLGSRLPFDASIEEQRNLPPMVMANEFAPELE
LPTVHIDNLTAAFDAVNYLYEQGHKRIGCIAGPEEMPLCHYRLQGYVQALRRCGIMVDPQYIARGDFTFEAGSKAMQQLL
DLPQPPTAVFCHSDVMALGALSQAKRQGLKVPEDLSIIGFDNIDLTQFCDPPLTTIAQPRYEIGREAMLLLLDQMQGQHV
GSGSRLMDCELIIRGSTRALP

Nucleotide

• Length: 1026 bp

>NTDB_id=106351 DP32_RS22830 WP_000644904.1 4545938..4546963(-) (cytR) [Escherichia coli strain SEC470]
GTGAAAGCGAAGAAGCAGGAAACTGCCGCGACCATGAAAGACGTTGCCCTCAAGGCAAAAGTCTCTACAGCGACCGTCTC
CCGAGCATTAATGAATCCCGATAAAGTCTCCCAGGCCACCCGTAATCGGGTTGAAAAAGCGGCCCGGGAAGTGGGTTATT
TACCGCAGCCTATGGGGCGCAACGTCAAGCGTAATGAATCCCGCACCATTCTGGTGATTGTCCCGGATATCTGCGATCCC
TTCTTTAGCGAAATTATTCGCGGTATCGAAGTTACGGCGGCAAATCACGGATATCTGGTGCTGATTGGCGACTGTGCGCA
TCAAAATCAGCAGGAAAAAACCTTTATCGATTTGATCATCACCAAGCAAATTGATGGCATGTTGTTGCTGGGTTCAAGGC
TGCCGTTTGATGCCAGCATTGAGGAACAGCGTAATCTGCCGCCGATGGTGATGGCGAACGAATTTGCACCGGAGCTGGAG
CTGCCTACAGTTCATATCGACAATCTGACCGCCGCATTTGATGCAGTAAATTATTTATATGAGCAAGGGCATAAACGGAT
TGGCTGTATAGCCGGTCCCGAAGAGATGCCGCTGTGTCACTACCGCCTGCAAGGCTATGTTCAGGCGCTGCGTCGCTGCG
GCATTATGGTTGATCCGCAATACATCGCCCGTGGCGACTTCACCTTCGAAGCCGGAAGCAAAGCGATGCAGCAGCTGCTT
GATCTTCCACAACCGCCTACTGCTGTCTTCTGCCATAGCGATGTGATGGCGCTCGGCGCACTTTCTCAGGCAAAACGCCA
GGGGCTGAAAGTCCCGGAAGACCTTTCCATAATCGGTTTTGATAACATCGACCTGACGCAATTTTGTGATCCGCCGCTGA
CAACCATCGCGCAGCCGCGTTACGAAATCGGTCGGGAAGCTATGCTGTTATTGCTTGATCAAATGCAGGGGCAACACGTT
GGCAGTGGCTCTCGTTTAATGGACTGCGAACTTATCATCCGGGGATCAACACGCGCGTTACCTTAA

Domains

Predicted by InterProScan.

• Bacterial regulatory proteins, lacI family (LacI) (11-56)

• Periplasmic binding protein-like domain (Peripla_BP_3) (176-337)

3D structure

• AlphaFold DB: P0ACN8

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
cytR	Vibrio parahaemolyticus RIMD 2210633	64.179	98.24	0.63
cytR	Vibrio cholerae C6706	65.443	95.894	0.628