Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   ACGLYC_RS16900 Genome accession   NZ_CP171691
Coordinates   3423812..3425197 (-) Length   461 a.a.
NCBI ID   WP_007407482.1    Uniprot ID   -
Organism   Bacillus velezensis strain K12     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3418812..3430197
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACGLYC_RS16865 (ACGLYC_16865) flgL 3418987..3419904 (-) 918 WP_007407477.1 flagellar hook-associated protein FlgL -
  ACGLYC_RS16870 (ACGLYC_16870) flgK 3419916..3421433 (-) 1518 WP_007407478.1 flagellar hook-associated protein FlgK -
  ACGLYC_RS16875 (ACGLYC_16875) - 3421449..3421931 (-) 483 WP_003151394.1 flagellar protein FlgN -
  ACGLYC_RS16880 (ACGLYC_16880) flgM 3421946..3422212 (-) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  ACGLYC_RS16885 (ACGLYC_16885) - 3422282..3422701 (-) 420 WP_007407479.1 TIGR03826 family flagellar region protein -
  ACGLYC_RS16890 (ACGLYC_16890) comFC 3422775..3423464 (-) 690 WP_197061611.1 phosphoribosyltransferase family protein Machinery gene
  ACGLYC_RS16895 (ACGLYC_16895) - 3423470..3423754 (-) 285 WP_007407481.1 late competence development ComFB family protein -
  ACGLYC_RS16900 (ACGLYC_16900) comFA 3423812..3425197 (-) 1386 WP_007407482.1 DEAD/DEAH box helicase Machinery gene
  ACGLYC_RS16905 (ACGLYC_16905) - 3425306..3426154 (-) 849 WP_007407483.1 DegV family protein -
  ACGLYC_RS16910 (ACGLYC_16910) degU 3426252..3426941 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  ACGLYC_RS16915 (ACGLYC_16915) degS 3427018..3428181 (-) 1164 WP_007407484.1 two-component sensor histidine kinase DegS Regulator
  ACGLYC_RS16920 (ACGLYC_16920) - 3428404..3429051 (+) 648 WP_007407485.1 YigZ family protein -

Sequence

Protein


Download         Length: 461 a.a.        Molecular weight: 52635.04 Da        Isoelectric Point: 10.2284

>NTDB_id=1063402 ACGLYC_RS16900 WP_007407482.1 3423812..3425197(-) (comFA) [Bacillus velezensis strain K12]
MSEGASEFSEVRDFFYGRHLLRSEIPFSDQRIKRFTEKEYITAEPSIIRRKNRYVCQRCGQSDQACFAAFWAPSAKRQIT
YCRACVVMGRADELTSLYSWNQAHENSWEPVKLSWEGTLTDGQKRAAAALTDAIKERQELLVWAVCGSGKTEMLFPGIEF
ALNHGLRVCVATPRTDVVLELLPRLKKAFEKVEVSALYGGSEDKGRLTPLMISTAHQLMRYRDIFDVMIIDEVDAFPFSA
DETLRFAVDKARKKNSALVYVTATPSDTLKKKAEAGLLKSVRIPARYHRKPLPEPRFLWCGNWKKKLQKGKLPRSVTDWV
RQKLQSQLPVFLFVPSVHVLKKTTDYFQKLNIRAEGVHAEDTFRKDKVKRFRDGRLDLLVTTTILERGVTVPKVQTCVLG
AEAPIFTESALVQIAGRTGRHYKHFSGDVVMFHFGMTNGMKKAKKHIEHMNKLAQKSKLLD

Nucleotide


Download         Length: 1386 bp        

>NTDB_id=1063402 ACGLYC_RS16900 WP_007407482.1 3423812..3425197(-) (comFA) [Bacillus velezensis strain K12]
ATGTCCGAAGGTGCTTCAGAATTTTCAGAGGTGCGGGATTTCTTTTACGGCCGGCATTTATTGAGATCTGAGATACCGTT
TTCAGACCAGCGCATTAAGCGTTTTACAGAAAAAGAATATATAACGGCCGAGCCGTCAATCATCCGCCGGAAAAACCGTT
ACGTCTGCCAACGATGCGGTCAGTCTGATCAAGCCTGCTTTGCGGCATTTTGGGCGCCCTCTGCCAAAAGGCAGATTACC
TATTGCCGTGCCTGTGTCGTGATGGGAAGGGCTGATGAACTGACATCATTATATTCTTGGAATCAAGCCCATGAAAACAG
CTGGGAGCCTGTAAAGCTTTCTTGGGAAGGAACACTGACAGACGGACAGAAGCGGGCGGCCGCCGCGCTTACAGATGCGA
TAAAAGAGAGACAAGAGCTGTTAGTATGGGCGGTTTGCGGATCGGGGAAAACAGAGATGCTGTTTCCGGGTATCGAGTTT
GCGCTGAATCACGGTTTGCGCGTCTGTGTCGCGACTCCGCGTACAGATGTCGTACTTGAACTGCTGCCGAGACTGAAAAA
AGCATTTGAGAAAGTCGAAGTTTCTGCTTTGTACGGCGGCAGCGAGGACAAAGGCCGTCTGACCCCGTTAATGATTTCAA
CCGCTCACCAGCTGATGCGCTACCGAGACATTTTTGATGTCATGATAATAGATGAAGTAGATGCGTTTCCTTTTTCAGCC
GATGAGACATTAAGATTCGCTGTTGATAAAGCGAGGAAGAAAAACAGCGCCCTTGTTTATGTAACGGCAACTCCTTCAGA
CACATTAAAAAAGAAGGCTGAAGCCGGTTTGCTGAAAAGCGTCCGCATACCGGCCAGATATCATCGGAAACCCCTCCCGG
AGCCGCGTTTTTTGTGGTGCGGCAATTGGAAGAAGAAGCTTCAGAAAGGAAAACTGCCGCGCTCTGTAACGGATTGGGTC
CGCCAAAAACTTCAATCACAGCTGCCGGTTTTCTTATTCGTTCCGTCTGTACACGTATTGAAAAAGACAACGGATTATTT
TCAGAAATTAAACATACGGGCAGAAGGCGTTCATGCGGAAGACACATTCAGAAAGGATAAAGTGAAACGGTTCAGAGACG
GCCGGCTTGACCTGCTGGTAACGACTACGATTTTAGAAAGAGGGGTTACCGTGCCCAAAGTTCAGACATGTGTCCTCGGC
GCAGAAGCACCTATCTTTACTGAGAGCGCGCTCGTACAGATCGCGGGCAGAACGGGAAGGCATTATAAACATTTCAGCGG
TGATGTCGTCATGTTTCATTTCGGAATGACAAACGGAATGAAAAAAGCAAAAAAACATATAGAACATATGAACAAATTGG
CACAAAAAAGTAAATTGTTGGACTAG

Domains

Predicted by InterproScan.

Type III restriction enzyme, res subunit (ResIII)

(118-266)

Helicase conserved C-terminal domain (Helicase_C)

(328-421)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

62.391

99.783

0.623

Multiple sequence alignment