Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   ACG4IV_RS09615 Genome accession   NZ_CP171688
Coordinates   2130524..2131531 (-) Length   335 a.a.
NCBI ID   WP_000224452.1    Uniprot ID   A0A085RG68
Organism   Vibrio cholerae strain M647     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 2125524..2136531
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACG4IV_RS09590 rraA 2126099..2126614 (-) 516 WP_000456236.1 ribonuclease E activity regulator RraA -
  ACG4IV_RS09595 - 2126689..2127606 (-) 918 WP_001066162.1 1,4-dihydroxy-2-naphthoate polyprenyltransferase -
  ACG4IV_RS09600 hslU 2127710..2129041 (-) 1332 WP_001293370.1 HslU--HslV peptidase ATPase subunit -
  ACG4IV_RS09605 hslV 2129107..2129664 (-) 558 WP_000208249.1 ATP-dependent protease subunit HslV -
  ACG4IV_RS09610 - 2129801..2130352 (-) 552 WP_001884022.1 SPOR domain-containing protein -
  ACG4IV_RS09615 cytR 2130524..2131531 (-) 1008 WP_000224452.1 DNA-binding transcriptional regulator CytR Regulator
  ACG4IV_RS09620 priA 2131837..2134041 (-) 2205 WP_001247858.1 primosomal protein N' -
  ACG4IV_RS09625 rpmE 2134296..2134514 (+) 219 WP_000643446.1 50S ribosomal protein L31 -
  ACG4IV_RS09630 - 2134822..2136099 (+) 1278 WP_001278588.1 malic enzyme-like NAD(P)-binding protein -
  ACG4IV_RS09635 metJ 2136210..2136527 (-) 318 WP_000796267.1 met regulon transcriptional regulator MetJ -

Sequence

Protein


Download         Length: 335 a.a.        Molecular weight: 37018.59 Da        Isoelectric Point: 7.0759

>NTDB_id=1063306 ACG4IV_RS09615 WP_000224452.1 2130524..2131531(-) (cytR) [Vibrio cholerae strain M647]
MATMKDVAQLAGVSTATVSRALMNPEKVSSSTRKRVEEAVLEAGYSPNSLARNLRRNESKTIVAIVPDICDPYFSEIIRG
IEDAAMEHGYLVLLGDSGQQKRRENSFVNLVFTKQADGMLLLGTDLPFDVSKPEQKNLPPMVMACEFAPELELPTVHIDN
LTSAFEAVNYLTQLGHKRIAQISGPQHAALCQFRHQGYQQALRRAGITMNPTYCTFGDFTFEAGAKAVRQLLALPEQPTA
IFCHNDTMAIGAIQEAKRLGLRVPQDLSVVGFDDIQFAQYCDPPLTTISQPRYEIGRQAMLMMLELLRGHDVRAGSRLLE
TKLVVRESAAPPSKK

Nucleotide


Download         Length: 1008 bp        

>NTDB_id=1063306 ACG4IV_RS09615 WP_000224452.1 2130524..2131531(-) (cytR) [Vibrio cholerae strain M647]
ATGGCGACAATGAAGGATGTTGCCCAGCTTGCTGGAGTTTCAACCGCGACCGTGTCTCGTGCGTTGATGAATCCAGAGAA
AGTCTCGTCGTCCACTCGTAAACGAGTGGAAGAGGCCGTGCTGGAAGCGGGTTACTCACCCAATTCTTTGGCGCGCAATT
TGCGCCGTAATGAATCGAAAACCATCGTTGCTATCGTGCCAGATATCTGTGATCCCTACTTTTCTGAGATCATTCGCGGT
ATTGAAGATGCCGCGATGGAGCACGGTTATCTGGTGCTGTTGGGGGATAGTGGTCAACAGAAGCGTCGGGAGAACTCGTT
CGTTAATCTGGTGTTTACCAAACAGGCAGACGGTATGTTGCTGCTGGGGACAGATTTGCCGTTTGATGTGAGTAAACCTG
AGCAGAAAAACCTACCGCCTATGGTGATGGCGTGTGAATTTGCGCCAGAGCTGGAATTGCCAACGGTACACATTGATAAC
CTGACCTCGGCATTTGAGGCGGTAAACTATCTCACTCAGCTTGGGCACAAACGGATTGCGCAGATCTCAGGTCCACAACA
TGCTGCGCTGTGCCAATTCCGTCATCAAGGCTATCAACAGGCGTTGCGTCGTGCTGGCATCACCATGAACCCGACTTACT
GCACTTTTGGCGATTTCACTTTTGAAGCCGGGGCAAAAGCGGTGCGTCAGCTGTTGGCATTGCCTGAGCAGCCGACCGCG
ATTTTCTGTCATAACGATACGATGGCGATTGGCGCAATTCAGGAAGCGAAGCGACTTGGCTTGCGCGTACCGCAAGATCT
CTCTGTGGTCGGTTTTGACGATATTCAGTTTGCCCAGTACTGCGATCCCCCATTAACCACCATTTCGCAGCCGCGTTATG
AGATTGGCCGTCAAGCCATGCTGATGATGCTTGAGCTGCTTCGCGGACACGATGTACGTGCTGGATCGCGTCTTTTGGAG
ACCAAGCTGGTCGTGCGTGAGAGTGCTGCGCCGCCAAGCAAGAAGTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, lacI family (LacI)

(3-48)

Periplasmic binding protein-like domain (Peripla_BP_3)

(168-328)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A085RG68

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio cholerae C6706

100

100

1
  cytR Vibrio parahaemolyticus RIMD 2210633

90.719

99.701

0.904

Multiple sequence alignment