Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoS   Type   Regulator
Locus tag   ACG4I2_RS11570 Genome accession   NZ_CP171674
Coordinates   2552838..2553845 (-) Length   335 a.a.
NCBI ID   WP_219208534.1    Uniprot ID   -
Organism   Vibrio cholerae strain M807     
Function   regulation of chitinases (predicted from homology)   
Competence regulation

Genomic Context

Location: 2547838..2558845
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACG4I2_RS11560 cysM 2549002..2549889 (+) 888 WP_001279365.1 cysteine synthase CysM -
  ACG4I2_RS11565 mutS 2550157..2552745 (+) 2589 WP_001894770.1 DNA mismatch repair protein MutS -
  ACG4I2_RS11570 rpoS 2552838..2553845 (-) 1008 WP_219208534.1 RNA polymerase sigma factor RpoS Regulator
  ACG4I2_RS11575 nlpD 2553919..2554854 (-) 936 WP_000177568.1 murein hydrolase activator NlpD -
  ACG4I2_RS11580 - 2554854..2555480 (-) 627 WP_000002982.1 protein-L-isoaspartate(D-aspartate) O-methyltransferase -
  ACG4I2_RS11585 surE 2555473..2556225 (-) 753 WP_000698379.1 5'/3'-nucleotidase SurE -
  ACG4I2_RS11590 truD 2556227..2557312 (-) 1086 WP_000129752.1 tRNA pseudouridine(13) synthase TruD -
  ACG4I2_RS11595 ispF 2557342..2557818 (-) 477 WP_000619209.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -
  ACG4I2_RS11600 ispD 2557815..2558513 (-) 699 WP_001061951.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  ACG4I2_RS11605 ftsB 2558510..2558794 (-) 285 WP_001263189.1 cell division protein FtsB -

Sequence

Protein


Download         Length: 335 a.a.        Molecular weight: 38533.45 Da        Isoelectric Point: 4.4145

>NTDB_id=1062979 ACG4I2_RS11570 WP_219208534.1 2552838..2553845(-) (rpoS) [Vibrio cholerae strain M807]
MSVSNTVTKVEEFDFEDEALEVLETDAELTSDEELVAVEGASEDVREEFDASAKSLDATQMYLSEIGFSPLLTAEEEVLY
ARRALRGDEAARKRMIESNLRLVVKISRRYSNRGLALLDLIKEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALM
NQTRTIRLPIHVVKELNIYLRTARELSQRLDHEPTPEEIALELDRPVDDVTKMLRLNERISSVDTPIGGDGDKALLDILP
DSHNADPEFSTQDDDIRESLLNWLDELNPKQKEVLARRFGLLGYEPSTLEEVGREINLTRERVRQIQVEGLRRLREILVK
QGLNMEALFNVEYDN

Nucleotide


Download         Length: 1008 bp        

>NTDB_id=1062979 ACG4I2_RS11570 WP_219208534.1 2552838..2553845(-) (rpoS) [Vibrio cholerae strain M807]
ATGAGTGTCAGCAATACCGTAACCAAAGTAGAAGAGTTCGATTTTGAAGATGAAGCACTGGAAGTGCTAGAAACTGATGC
CGAGCTCACCAGTGATGAAGAATTAGTTGCTGTTGAAGGGGCAAGTGAAGACGTTCGTGAAGAGTTTGATGCTTCTGCGA
AAAGTCTTGATGCGACCCAGATGTATCTCAGCGAAATTGGTTTTTCACCGCTCCTTACTGCCGAAGAAGAAGTGCTTTAT
GCTCGTCGTGCCTTACGTGGTGATGAAGCCGCACGTAAACGCATGATTGAAAGTAACTTGCGTCTGGTGGTAAAAATTTC
ACGCCGTTACAGCAACCGAGGATTAGCACTGCTCGATCTGATTAAAGAAGGTAATCTTGGTCTGATCCGTGCGGTTGAGA
AATTCGATCCAGAACGCGGTTTCCGCTTCTCTACCTACGCAACATGGTGGATCCGTCAAACCATTGAACGTGCGCTGATG
AACCAAACACGCACCATTCGTCTACCGATTCATGTCGTCAAAGAGCTGAACATTTATTTGCGTACTGCTCGCGAATTATC
ACAGCGCCTTGACCACGAACCTACACCAGAAGAAATTGCTCTTGAGTTAGACCGACCTGTCGATGATGTCACTAAGATGC
TGCGTCTTAACGAACGGATCAGCTCAGTGGATACGCCAATTGGTGGGGATGGAGATAAGGCACTGCTGGATATTTTGCCA
GACTCTCACAATGCCGATCCTGAGTTTTCAACTCAAGATGATGACATTCGTGAATCGCTGCTCAACTGGTTGGATGAACT
TAATCCAAAGCAAAAAGAAGTGCTTGCGCGTCGCTTTGGGCTTCTTGGCTATGAACCATCGACCTTGGAAGAAGTGGGTC
GTGAGATCAATCTCACTCGTGAGCGTGTTCGCCAAATCCAAGTGGAAGGTCTACGTCGTCTGCGTGAGATTTTGGTGAAA
CAAGGTTTGAATATGGAAGCGCTGTTTAACGTCGAATACGACAACTAA

Domains

Predicted by InterproScan.

Sigma-70, region 4 (Sigma70_r4)

(263-316)

Sigma-70 region 3 (Sigma70_r3)

(175-249)

Sigma-70 region 2 (Sigma70_r2)

(95-164)

Sigma-70 factor, region 1.2 (Sigma70_r1_2)

(57-90)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoS Vibrio cholerae O1 biovar El Tor strain E7946

99.701

100

0.997

Multiple sequence alignment