Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxP   Type   Regulator
Locus tag   ACG4IX_RS14950 Genome accession   NZ_CP171669
Coordinates   277889..278983 (+) Length   364 a.a.
NCBI ID   WP_394867855.1    Uniprot ID   -
Organism   Vibrio cholerae strain M810     
Function   autoinducer sensor (predicted from homology)   
Competence regulation

Genomic Context

Location: 272889..283983
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACG4IX_RS14920 - 274032..274283 (-) 252 WP_001882582.1 YgjV family protein -
  ACG4IX_RS14925 - 274696..275016 (-) 321 WP_001089529.1 DUF496 family protein -
  ACG4IX_RS14930 - 275204..275401 (+) 198 WP_001246071.1 hypothetical protein -
  ACG4IX_RS14935 - 275443..276093 (+) 651 WP_001025631.1 YceH family protein -
  ACG4IX_RS14940 - 276110..276415 (+) 306 WP_000429067.1 GIY-YIG nuclease family protein -
  ACG4IX_RS14945 traF 276517..277677 (+) 1161 WP_001025860.1 conjugal transfer protein TraF -
  ACG4IX_RS14950 luxP 277889..278983 (+) 1095 WP_394867855.1 substrate-binding domain-containing protein Regulator
  ACG4IX_RS14955 luxQ 279001..281574 (+) 2574 WP_001026306.1 quorum-sensing autoinducer 2 sensor kinase/phosphatase LuxQ Regulator
  ACG4IX_RS14960 - 281566..282231 (-) 666 WP_000268204.1 flagellar brake protein -
  ACG4IX_RS14965 - 282475..282993 (-) 519 WP_000914961.1 hypothetical protein -
  ACG4IX_RS14970 - 283245..283643 (-) 399 WP_000831416.1 YgiW/YdeI family stress tolerance OB fold protein -

Sequence

Protein


Download         Length: 364 a.a.        Molecular weight: 41195.83 Da        Isoelectric Point: 6.5069

>NTDB_id=1062844 ACG4IX_RS14950 WP_394867855.1 277889..278983(+) (luxP) [Vibrio cholerae strain M810]
MKRKLISPLFLIAALFSSTGQADSLKGYWHYDEFLAEFPEQRPISELFAQTVRDKPSALTVAQEQPVIISVVYPGQQISD
YWVRNIKAFEKRMDALGIRYQINQVFTRPNLDTRQQSVSLMEALKNKSDYLIFTLDTTRHRKFIEHVLHSSETKLILQNI
TTPVKNWQGKQPMMYIGFDHEYGAQLLAQYYQAHAPKKPYSVLYFSEGYISEARGDTFIQDMNAVHHFPLASSYYTKATE
QSGYEATLNIVKNNPEIGFIYACATDVALGAAQALKELNRQDILVNGWGGGSAELEALAKGELDVTVMRMNDDTGVAMAE
AIKWDLEGKSVPLVYSGDFEVVTKQDSAARIAELKARAFRYSDR

Nucleotide


Download         Length: 1095 bp        

>NTDB_id=1062844 ACG4IX_RS14950 WP_394867855.1 277889..278983(+) (luxP) [Vibrio cholerae strain M810]
ATGAAAAGAAAGCTAATATCTCCGCTGTTTCTGATAGCAGCACTCTTCAGCTCAACTGGTCAAGCCGATTCATTAAAAGG
CTATTGGCATTATGATGAATTTCTTGCTGAGTTCCCTGAACAGCGGCCAATTTCCGAGCTTTTTGCTCAAACAGTTCGTG
ATAAACCGAGTGCGTTGACGGTGGCGCAAGAACAACCCGTCATTATTTCGGTGGTCTATCCCGGACAGCAAATTTCTGAC
TATTGGGTTCGCAACATCAAAGCGTTTGAAAAGCGAATGGATGCTTTGGGGATTCGCTATCAAATCAATCAGGTGTTTAC
TCGCCCGAATCTTGATACTCGCCAGCAGAGTGTTTCCTTGATGGAAGCGCTGAAAAATAAGAGCGACTATCTGATTTTTA
CCTTAGATACCACCCGTCACCGCAAATTCATTGAGCATGTGCTGCACTCCTCCGAAACGAAACTGATTTTGCAAAACATC
ACGACGCCAGTCAAAAATTGGCAAGGCAAGCAGCCCATGATGTACATCGGTTTTGATCATGAGTACGGTGCGCAATTATT
GGCGCAATATTACCAAGCACATGCTCCGAAAAAGCCGTACTCAGTACTTTATTTTTCCGAGGGGTATATCAGTGAAGCGC
GGGGAGACACCTTCATTCAAGATATGAACGCGGTGCACCATTTTCCGTTGGCTTCTTCCTATTACACCAAGGCAACCGAA
CAAAGTGGCTATGAAGCGACCCTAAACATCGTCAAGAATAATCCAGAAATTGGCTTTATTTACGCCTGTGCGACGGACGT
CGCTTTGGGAGCTGCGCAGGCACTGAAAGAGCTGAATCGACAAGATATTCTGGTCAATGGTTGGGGAGGCGGTTCGGCAG
AGCTTGAAGCGCTTGCCAAAGGAGAATTGGATGTCACTGTGATGCGTATGAATGACGATACGGGTGTGGCGATGGCTGAA
GCGATTAAATGGGATTTGGAAGGGAAATCCGTACCTTTGGTCTATTCAGGCGATTTTGAAGTGGTCACCAAACAAGATTC
AGCAGCACGTATTGCAGAACTGAAAGCTCGGGCTTTCCGTTATTCGGATCGTTAG

Domains

Predicted by InterproScan.

Periplasmic binding protein domain (Peripla_BP_4)

(69-323)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxP Vibrio cholerae strain A1552

99.725

100

0.997

Multiple sequence alignment