Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicX   Type   Regulator
Locus tag   AABA14_RS05795 Genome accession   NZ_AP028607
Coordinates   1145637..1146446 (-) Length   269 a.a.
NCBI ID   WP_001289493.1    Uniprot ID   Q9RCS5
Organism   Streptococcus pneumoniae strain Sep2     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1140637..1151446
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AABA14_RS05775 (TKY123642_11370) - 1142891..1143877 (+) 987 WP_054367360.1 L-lactate dehydrogenase -
  AABA14_RS05780 (TKY123642_11380) - 1144228..1145001 (-) 774 WP_000731132.1 ion transporter -
  AABA14_RS05785 (TKY123642_11390) - 1145048..1145302 (-) 255 WP_050221040.1 type II toxin-antitoxin system RelE/ParE family toxin -
  AABA14_RS05790 (TKY123642_11400) - 1145304..1145546 (-) 243 WP_000208080.1 DUF6290 family protein -
  AABA14_RS05795 (TKY123642_11410) vicX 1145637..1146446 (-) 810 WP_001289493.1 MBL fold metallo-hydrolase Regulator
  AABA14_RS05800 (TKY123642_11420) micB 1146448..1147797 (-) 1350 WP_000886210.1 cell wall metabolism sensor histidine kinase VicK Regulator
  AABA14_RS05805 (TKY123642_11430) micA 1147790..1148494 (-) 705 WP_000722076.1 response regulator YycF Regulator
  AABA14_RS05810 (TKY123642_11440) mutY 1148550..1149725 (-) 1176 WP_050221036.1 A/G-specific adenine glycosylase -
  AABA14_RS05815 - 1149822..1149947 (+) 126 WP_001818232.1 hypothetical protein -

Sequence

Protein


Download         Length: 269 a.a.        Molecular weight: 29916.89 Da        Isoelectric Point: 6.1743

>NTDB_id=106276 AABA14_RS05795 WP_001289493.1 1145637..1146446(-) (vicX) [Streptococcus pneumoniae strain Sep2]
MSEIGFKYSILASGSSGNSFYLETSKKKLLVDAGLSGKKITSLLAEINRKPEDLDAILITHEHSDHIHGVGVLARKYGMD
LYANEKTWQAMENSKYLGKVDSSQKHIFEMGKTKTFGDIDIESFGVSHDAVAPQFYRFMKDDKSFVLLTDTGYVSDRMAG
IVENADGYLIEANHDVEILRSGSYAWRLKQRILSDLGHLSNEDGAEAMIRTLGNRTKKIYLGHLSKENNIKELAHMTMVN
QLAQADLGVGVDFKVYDTSPDTATPLTEI

Nucleotide


Download         Length: 810 bp        

>NTDB_id=106276 AABA14_RS05795 WP_001289493.1 1145637..1146446(-) (vicX) [Streptococcus pneumoniae strain Sep2]
ATGAGTGAAATAGGCTTTAAATACAGTATTTTAGCATCGGGTTCCAGTGGAAATTCTTTTTATCTGGAAACCTCAAAAAA
GAAGCTTTTAGTGGATGCAGGCTTGTCTGGCAAGAAAATTACCAGTCTGCTAGCTGAAATTAACCGCAAGCCAGAAGACC
TGGATGCCATCTTGATTACCCATGAGCATTCAGATCATATCCATGGAGTAGGCGTTTTGGCTCGCAAGTATGGTATGGAT
CTTTATGCCAATGAAAAGACCTGGCAAGCTATGGAAAATAGTAAATATCTTGGCAAGGTGGATTCTTCGCAAAAGCATAT
TTTTGAAATGGGTAAAACCAAAACCTTTGGAGATATCGACATCGAGAGTTTTGGTGTAAGCCATGATGCAGTCGCACCGC
AGTTCTATCGCTTTATGAAGGATGATAAGAGTTTTGTCCTTTTGACAGATACAGGTTATGTCAGTGACCGTATGGCGGGC
ATTGTCGAAAATGCGGATGGCTATCTTATCGAGGCCAACCATGATGTAGAGATTTTGCGATCAGGTTCTTACGCTTGGCG
ACTCAAACAACGAATCCTATCTGACCTTGGGCACCTTTCTAACGAGGACGGTGCTGAAGCTATGATTCGGACGCTAGGAA
ATCGTACTAAGAAGATTTACCTTGGGCATTTATCTAAGGAAAATAATATCAAGGAACTGGCTCATATGACCATGGTCAAT
CAGCTGGCTCAAGCTGATCTGGGAGTCGGAGTAGACTTTAAGGTTTATGATACCTCACCAGATACCGCAACACCATTGAC
AGAGATATAG

Domains

Predicted by InterproScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(15-223)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9RCS5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicX Streptococcus mutans UA159

77.323

100

0.773

Multiple sequence alignment