Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   ACG4IU_RS01700 Genome accession   NZ_CP171664
Coordinates   344875..345393 (+) Length   172 a.a.
NCBI ID   WP_001130227.1    Uniprot ID   -
Organism   Vibrio cholerae strain M813     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 339875..350393
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACG4IU_RS01690 - 340285..343140 (+) 2856 WP_001233047.1 pitrilysin family protein -
  ACG4IU_RS01695 gshA 343252..344826 (+) 1575 WP_000032608.1 glutamate--cysteine ligase -
  ACG4IU_RS01700 luxS 344875..345393 (+) 519 WP_001130227.1 S-ribosylhomocysteine lyase Regulator
  ACG4IU_RS01705 - 345463..346743 (-) 1281 WP_000340990.1 HlyC/CorC family transporter -
  ACG4IU_RS01710 - 346826..347620 (-) 795 WP_000369278.1 inner membrane protein YpjD -
  ACG4IU_RS01715 ffh 347833..349218 (+) 1386 WP_000462720.1 signal recognition particle protein -
  ACG4IU_RS01720 rpsP 349454..349702 (+) 249 WP_000256449.1 30S ribosomal protein S16 -
  ACG4IU_RS01725 rimM 349730..350284 (+) 555 WP_000061906.1 ribosome maturation factor RimM -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 19080.90 Da        Isoelectric Point: 5.2199

>NTDB_id=1062716 ACG4IU_RS01700 WP_001130227.1 344875..345393(+) (luxS) [Vibrio cholerae strain M813]
MPLLDSFTVDHTRMNAPAVRVAKTMQTPKGDTITVFDLRFTMPNKDILSERGIHTLEHLYAGFMRNHLNGSQVEIIDISP
MGCRTGFYMSLIGAPTEQQVAQAWLAAMQDVLKVESQEQIPELNEYQCGTAAMHSLEEAKAIAKNVIAAGISVNRNDELA
LPESMLNELKVH

Nucleotide


Download         Length: 519 bp        

>NTDB_id=1062716 ACG4IU_RS01700 WP_001130227.1 344875..345393(+) (luxS) [Vibrio cholerae strain M813]
ATGCCATTATTAGACAGTTTTACCGTCGATCATACTCGTATGAATGCACCGGCGGTGCGTGTTGCCAAAACCATGCAAAC
CCCAAAAGGGGATACGATTACCGTATTTGATTTGCGTTTTACTATGCCAAACAAAGATATCTTGTCTGAGCGCGGTATCC
ATACTCTAGAGCATCTCTACGCGGGCTTTATGCGCAATCACCTTAACGGCAGCCAAGTGGAGATCATCGATATTTCACCA
ATGGGTTGCCGTACAGGTTTCTACATGAGCTTGATTGGTGCGCCGACAGAACAGCAAGTGGCACAAGCATGGCTAGCCGC
AATGCAAGATGTGTTGAAAGTTGAAAGCCAAGAGCAAATTCCTGAGCTGAATGAGTACCAGTGCGGCACTGCGGCGATGC
ACTCGCTCGAAGAAGCCAAAGCGATTGCGAAAAACGTGATTGCGGCAGGCATCTCGGTTAACCGTAACGATGAGTTGGCG
CTGCCCGAATCTATGCTCAATGAGCTGAAGGTTCACTAA

Domains

Predicted by InterproScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-153)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

100

100

1

Multiple sequence alignment