Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   ACG4IP_RS11415 Genome accession   NZ_CP171656
Coordinates   2523041..2523559 (-) Length   172 a.a.
NCBI ID   WP_001130227.1    Uniprot ID   -
Organism   Vibrio cholerae strain M820     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2518041..2528559
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACG4IP_RS11390 rimM 2518150..2518704 (-) 555 WP_000061906.1 ribosome maturation factor RimM -
  ACG4IP_RS11395 rpsP 2518732..2518980 (-) 249 WP_000256449.1 30S ribosomal protein S16 -
  ACG4IP_RS11400 ffh 2519216..2520601 (-) 1386 WP_000462720.1 signal recognition particle protein -
  ACG4IP_RS11405 - 2520814..2521608 (+) 795 WP_000369278.1 inner membrane protein YpjD -
  ACG4IP_RS11410 - 2521691..2522971 (+) 1281 WP_000340990.1 HlyC/CorC family transporter -
  ACG4IP_RS11415 luxS 2523041..2523559 (-) 519 WP_001130227.1 S-ribosylhomocysteine lyase Regulator
  ACG4IP_RS11420 gshA 2523608..2525182 (-) 1575 WP_000032608.1 glutamate--cysteine ligase -
  ACG4IP_RS11425 - 2525294..2528149 (-) 2856 WP_001233047.1 pitrilysin family protein -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 19080.90 Da        Isoelectric Point: 5.2199

>NTDB_id=1062544 ACG4IP_RS11415 WP_001130227.1 2523041..2523559(-) (luxS) [Vibrio cholerae strain M820]
MPLLDSFTVDHTRMNAPAVRVAKTMQTPKGDTITVFDLRFTMPNKDILSERGIHTLEHLYAGFMRNHLNGSQVEIIDISP
MGCRTGFYMSLIGAPTEQQVAQAWLAAMQDVLKVESQEQIPELNEYQCGTAAMHSLEEAKAIAKNVIAAGISVNRNDELA
LPESMLNELKVH

Nucleotide


Download         Length: 519 bp        

>NTDB_id=1062544 ACG4IP_RS11415 WP_001130227.1 2523041..2523559(-) (luxS) [Vibrio cholerae strain M820]
ATGCCATTATTAGACAGTTTTACCGTCGATCATACTCGTATGAATGCACCGGCGGTGCGTGTTGCCAAAACCATGCAAAC
CCCAAAAGGGGATACGATTACCGTATTTGATTTGCGTTTTACTATGCCAAACAAAGATATCTTGTCTGAGCGCGGTATCC
ATACTCTAGAGCATCTCTACGCGGGCTTTATGCGCAATCACCTTAACGGCAGCCAAGTGGAGATCATCGATATTTCACCA
ATGGGTTGCCGTACAGGTTTCTACATGAGCTTGATTGGTGCGCCGACAGAACAGCAAGTGGCACAAGCATGGCTAGCCGC
AATGCAAGATGTGTTGAAAGTTGAAAGCCAAGAGCAAATTCCTGAGCTGAATGAGTACCAGTGCGGCACTGCGGCGATGC
ACTCGCTCGAAGAAGCCAAAGCGATTGCGAAAAACGTGATTGCGGCAGGCATCTCGGTTAACCGTAACGATGAGTTGGCG
CTGCCCGAATCTATGCTCAATGAGCTGAAGGTTCACTAA

Domains

Predicted by InterproScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-153)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

100

100

1

Multiple sequence alignment