Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   ACG4PL_RS15245 Genome accession   NZ_CP171637
Coordinates   3117583..3118212 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain TC24     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3112583..3123212
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACG4PL_RS15230 (ACG4PL_15230) helD 3112825..3114879 (-) 2055 WP_001295354.1 DNA helicase IV -
  ACG4PL_RS15235 (ACG4PL_15235) yccF 3115002..3115448 (+) 447 WP_001261235.1 YccF domain-containing protein -
  ACG4PL_RS15240 (ACG4PL_15240) yccS 3115458..3117620 (+) 2163 WP_000875061.1 YccS family putative transporter -
  ACG4PL_RS15245 (ACG4PL_15245) sxy/tfoX 3117583..3118212 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  ACG4PL_RS15250 (ACG4PL_15250) sulA 3118431..3118940 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  ACG4PL_RS15255 (ACG4PL_15255) ompA 3119297..3120349 (+) 1053 WP_001307702.1 porin OmpA -
  ACG4PL_RS15260 (ACG4PL_15260) matP 3120424..3120876 (-) 453 WP_000877158.1 macrodomain Ter protein MatP -
  ACG4PL_RS15265 (ACG4PL_15265) ycbZ 3121062..3122822 (+) 1761 WP_097466077.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=1062448 ACG4PL_RS15245 WP_000839153.1 3117583..3118212(-) (sxy/tfoX) [Escherichia coli strain TC24]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=1062448 ACG4PL_RS15245 WP_000839153.1 3117583..3118212(-) (sxy/tfoX) [Escherichia coli strain TC24]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1

Multiple sequence alignment