Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   ACGRWF_RS11450 Genome accession   NZ_CP171623
Coordinates   2368280..2369644 (-) Length   454 a.a.
NCBI ID   WP_404650049.1    Uniprot ID   -
Organism   Lacticaseibacillus paracasei strain E     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2363280..2374644
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACGRWF_RS11430 (ACGRWF_11430) - 2363570..2364841 (-) 1272 WP_003591636.1 MucBP domain-containing protein -
  ACGRWF_RS11435 (ACGRWF_11435) - 2365159..2365956 (-) 798 WP_404650588.1 ABC transporter permease -
  ACGRWF_RS11440 (ACGRWF_11440) - 2365953..2366840 (-) 888 WP_003591640.1 ABC transporter ATP-binding protein -
  ACGRWF_RS11445 (ACGRWF_11445) - 2367143..2368258 (-) 1116 WP_003567252.1 PIN/TRAM domain-containing protein -
  ACGRWF_RS11450 (ACGRWF_11450) radA 2368280..2369644 (-) 1365 WP_404650049.1 DNA repair protein RadA Machinery gene
  ACGRWF_RS11455 (ACGRWF_11455) - 2369661..2370203 (-) 543 WP_003567256.1 dUTP diphosphatase -
  ACGRWF_RS11460 (ACGRWF_11460) - 2370424..2370714 (+) 291 WP_003567258.1 GNAT family N-acetyltransferase -
  ACGRWF_RS11465 (ACGRWF_11465) - 2370830..2371207 (-) 378 WP_003567260.1 DUF805 domain-containing protein -
  ACGRWF_RS11470 (ACGRWF_11470) - 2371452..2372771 (+) 1320 WP_003571381.1 C1 family peptidase -
  ACGRWF_RS11475 (ACGRWF_11475) - 2373094..2374440 (+) 1347 WP_003576225.1 aminopeptidase C -

Sequence

Protein


Download         Length: 454 a.a.        Molecular weight: 49084.39 Da        Isoelectric Point: 7.4216

>NTDB_id=1062399 ACGRWF_RS11450 WP_404650049.1 2368280..2369644(-) (radA) [Lacticaseibacillus paracasei strain E]
MAKAKTQYGCQNCGYISATYLGRCPNCGGWNTLVEETVSSSKSVPRQTAAGSKVKPTRMNDVTITKETRVKTGLDELNRV
LGGGVVPGSLVLIGGDPGIGKSTLLLQVSGQLANTGGTVLYVSGEESASQIKMRAGRLGVANSGMYLYPETDMPSIEDVI
NQMQPDYVVIDSVQTMNVPEMNSAVGSVAQIREVTAELMRIAKSKGVTIFIVGHVTKEGAIAGPKILEHMVDTVLYFEGD
MHHTYRILRSVKNRFGSTNEIGIFEMHQDGLQEVANPSEIFLEERLAGATGSAVVVSMEGTRPILVEIQALISPTMYGNA
KRTSSGLDHNRVSLIMAVLEKRANLMLQNQDAYLKATGGVKLDEPAIDLAMAVAIASSYRDKEISPTDCFVGEIGLTGEV
RRVNRIEERVKEAAKLGFKRIFVPRNNLQGWHAPKDIQVIGVTSIAEALHKVFN

Nucleotide


Download         Length: 1365 bp        

>NTDB_id=1062399 ACGRWF_RS11450 WP_404650049.1 2368280..2369644(-) (radA) [Lacticaseibacillus paracasei strain E]
ATGGCGAAAGCAAAAACACAATATGGTTGCCAAAACTGTGGCTATATTTCAGCCACTTATCTAGGCCGGTGTCCAAATTG
CGGCGGCTGGAACACCTTAGTGGAAGAAACCGTCAGTTCAAGCAAGTCTGTGCCGCGACAAACAGCAGCCGGCAGTAAGG
TAAAGCCGACGCGGATGAACGATGTGACGATCACCAAAGAAACGCGCGTCAAGACTGGCTTAGATGAACTGAACCGGGTG
CTTGGCGGCGGAGTGGTGCCAGGGTCACTGGTGCTGATCGGCGGGGATCCGGGGATTGGTAAATCAACCTTGCTATTACA
AGTATCAGGGCAGTTGGCTAATACCGGCGGAACCGTTTTGTATGTCTCTGGCGAAGAAAGTGCCAGTCAGATCAAAATGC
GGGCTGGCCGGCTTGGTGTGGCAAATTCGGGGATGTACTTGTATCCCGAAACCGACATGCCGAGTATTGAAGACGTCATC
AACCAAATGCAGCCGGATTACGTTGTGATCGACTCCGTTCAAACTATGAATGTGCCAGAAATGAATTCAGCGGTCGGTTC
TGTGGCACAGATTCGTGAAGTGACGGCAGAACTGATGCGCATTGCCAAGTCCAAAGGCGTGACCATTTTCATCGTTGGCC
ATGTCACTAAGGAAGGGGCGATTGCCGGGCCGAAGATTCTTGAGCATATGGTCGACACGGTGCTCTATTTTGAAGGCGAC
ATGCACCACACGTATCGAATCTTAAGATCCGTCAAAAATCGATTTGGATCGACCAATGAAATCGGCATTTTTGAAATGCA
TCAAGACGGGTTACAGGAAGTCGCCAATCCCTCGGAAATCTTCTTGGAAGAACGCTTGGCGGGGGCAACCGGTTCTGCGG
TGGTTGTTTCGATGGAAGGCACCCGGCCAATCTTAGTCGAGATTCAAGCCTTGATCAGTCCAACGATGTATGGCAATGCT
AAACGGACGAGCAGTGGGTTGGATCACAATCGAGTGAGCTTGATCATGGCCGTTCTTGAGAAGCGGGCTAACTTGATGTT
GCAAAATCAGGACGCCTATCTCAAGGCAACAGGCGGTGTGAAACTCGATGAGCCGGCGATTGACCTCGCCATGGCTGTGG
CAATTGCGTCATCTTATCGAGATAAGGAGATTTCACCGACAGATTGTTTTGTCGGTGAAATCGGATTGACGGGGGAAGTG
CGCCGCGTCAATCGGATCGAAGAACGTGTCAAAGAGGCGGCCAAACTGGGTTTCAAACGGATTTTTGTACCACGTAACAA
CTTGCAAGGCTGGCATGCGCCAAAAGATATTCAAGTCATTGGTGTTACAAGCATTGCCGAAGCGCTGCATAAGGTCTTTA
ATTAA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(69-219)

Subunit ChlI of Mg-chelatase (ChlI)

(363-427)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus mitis NCTC 12261

67.991

99.78

0.678
  radA Streptococcus pneumoniae Rx1

67.991

99.78

0.678
  radA Streptococcus pneumoniae D39

67.991

99.78

0.678
  radA Streptococcus pneumoniae R6

67.991

99.78

0.678
  radA Streptococcus pneumoniae TIGR4

67.991

99.78

0.678
  radA Streptococcus mitis SK321

67.77

99.78

0.676
  radA Bacillus subtilis subsp. subtilis str. 168

64.758

100

0.648

Multiple sequence alignment