Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   ACGRWF_RS01100 Genome accession   NZ_CP171623
Coordinates   215821..217620 (-) Length   599 a.a.
NCBI ID   WP_003577415.1    Uniprot ID   -
Organism   Lacticaseibacillus paracasei strain E     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 210821..222620
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACGRWF_RS01075 (ACGRWF_01075) - 212095..212439 (+) 345 WP_003563007.1 hypothetical protein -
  ACGRWF_RS01080 (ACGRWF_01080) - 212513..213232 (+) 720 WP_003577411.1 metal ABC transporter ATP-binding protein -
  ACGRWF_RS01085 (ACGRWF_01085) - 213229..214026 (+) 798 WP_003563011.1 metal ABC transporter permease -
  ACGRWF_RS01090 (ACGRWF_01090) - 214098..214946 (-) 849 WP_003600981.1 metallophosphoesterase -
  ACGRWF_RS01095 (ACGRWF_01095) - 214943..215824 (-) 882 WP_016363473.1 NAD(P)-dependent oxidoreductase -
  ACGRWF_RS01100 (ACGRWF_01100) pepF 215821..217620 (-) 1800 WP_003577415.1 oligoendopeptidase F Regulator
  ACGRWF_RS01105 (ACGRWF_01105) - 217749..218843 (+) 1095 WP_016368837.1 LCP family protein -
  ACGRWF_RS01110 (ACGRWF_01110) brnQ 218994..220373 (-) 1380 WP_003573173.1 branched-chain amino acid transport system II carrier protein -
  ACGRWF_RS01115 (ACGRWF_01115) - 221114..221800 (-) 687 WP_003563024.1 hydrolase -

Sequence

Protein


Download         Length: 599 a.a.        Molecular weight: 67252.36 Da        Isoelectric Point: 5.6373

>NTDB_id=1062378 ACGRWF_RS01100 WP_003577415.1 215821..217620(-) (pepF) [Lacticaseibacillus paracasei strain E]
MQHLPARAEVPTELTWDLTTIYPDDKAWQVDFEAVRQQAKEAAALKGTLGKSPEALVAGIKAVLAVFRRFEKVYVYSSLK
SDQDTGNAAYQAMNAKAESLAADLASQLAFMDPEILAIPADQLTAWRDTESLKPYGHFIDAITVNRQHVLTTAAESLIAS
AGDALNASHATFNVLNNSDLQFGFVENEDGETVQLSNGLYGQLIRSTNRKLRKDAFEALLRAYESLKNTFAQTLSGQIKA
HNFNALAHHYPDARAAAMASNHIPESVYTTLLDQVNAHLPLLHRYIALRKKILNVDQLHMYDIYTPLTGRPPLSFTLDQA
KDEALKALAPLGNDYLDHMREIFNNRYIDVVENKGKRSGAYSGGAYDTNPFILLNWHDAVDELYTLVHETGHSVHSWYTR
HHQPYVYGDYPIFVAEIASTTNENLLTDYFLKNTNDPKVRAYILNYYLDGFKGTVFRQAQFADFEHWIHQQDQHGEPLTA
TSMSSYYADLNARYYGPDVARDPEIAFEWARIPHFYYNYYVYQYATGFAAASTLAAGISGGEPEAVSRYIGYLKSGSSKY
AIDTMKAAGVDMTKPDYLEAAFSLFEQRLAELEEILQKG

Nucleotide


Download         Length: 1800 bp        

>NTDB_id=1062378 ACGRWF_RS01100 WP_003577415.1 215821..217620(-) (pepF) [Lacticaseibacillus paracasei strain E]
ATGCAACATTTACCGGCACGCGCAGAAGTCCCTACCGAATTGACATGGGATCTCACGACTATTTATCCAGATGACAAGGC
TTGGCAAGTTGACTTTGAAGCCGTTCGTCAGCAAGCAAAGGAAGCGGCAGCACTTAAGGGTACATTGGGCAAGTCACCTG
AAGCACTTGTCGCAGGTATCAAAGCCGTTCTCGCGGTGTTCAGACGCTTTGAAAAGGTTTATGTCTATTCCAGCTTGAAA
AGTGATCAAGACACTGGCAATGCAGCGTATCAAGCCATGAATGCCAAAGCAGAAAGTCTGGCAGCTGATCTTGCCAGCCA
ATTAGCCTTCATGGATCCGGAAATTCTGGCGATTCCAGCCGATCAGCTGACCGCTTGGCGCGATACCGAAAGCCTCAAAC
CCTATGGCCACTTTATCGATGCCATCACTGTGAATCGCCAACACGTCCTGACCACAGCGGCTGAGTCATTAATTGCCAGT
GCTGGGGATGCGCTGAATGCCAGTCATGCAACCTTTAATGTGTTGAACAACTCCGACCTGCAATTTGGCTTTGTTGAAAA
TGAAGACGGTGAGACCGTGCAACTCAGCAATGGTTTGTATGGTCAACTCATTCGGTCAACAAATCGCAAGCTGCGTAAAG
ACGCGTTTGAGGCTTTGCTGCGGGCATATGAAAGTCTTAAGAATACCTTTGCTCAAACATTGAGTGGCCAGATCAAAGCT
CATAACTTCAATGCTTTAGCGCATCATTATCCCGATGCTCGCGCTGCTGCAATGGCAAGTAACCACATCCCCGAAAGTGT
CTACACAACACTGCTTGATCAAGTCAACGCTCACTTGCCATTACTACATCGCTATATTGCCTTACGTAAAAAGATTCTGA
ATGTCGATCAACTGCATATGTATGATATCTACACACCGCTGACCGGACGTCCGCCATTGAGTTTCACCCTCGATCAGGCA
AAAGACGAAGCCTTAAAGGCATTGGCTCCGCTGGGAAATGATTATTTAGATCATATGCGGGAAATCTTTAATAATCGTTA
CATTGATGTCGTCGAAAATAAGGGCAAACGGTCCGGCGCTTATTCCGGTGGCGCGTATGACACCAATCCGTTCATTTTAC
TGAACTGGCACGATGCCGTTGATGAATTGTACACTTTGGTTCACGAAACTGGTCACAGTGTGCACAGCTGGTACACTCGT
CATCACCAGCCTTACGTTTATGGCGACTACCCAATCTTCGTCGCAGAAATTGCCTCAACAACCAATGAAAATTTATTGAC
GGACTACTTCCTAAAAAACACCAATGATCCTAAAGTTCGGGCGTACATTTTGAATTACTATCTAGACGGCTTCAAAGGAA
CGGTCTTCCGTCAGGCTCAATTTGCCGACTTTGAACATTGGATTCATCAACAAGACCAGCATGGTGAACCATTGACGGCT
ACCAGCATGTCCTCCTATTATGCGGATCTCAATGCCCGTTATTACGGACCAGATGTTGCACGTGATCCTGAAATCGCCTT
TGAATGGGCTCGTATTCCACATTTCTATTACAATTATTATGTTTACCAGTACGCAACTGGTTTTGCCGCTGCCTCGACTC
TGGCCGCCGGCATCAGCGGTGGCGAACCAGAGGCGGTTTCCCGCTATATCGGCTACTTGAAATCTGGCAGTTCCAAGTAT
GCGATTGATACAATGAAAGCGGCCGGCGTTGATATGACCAAGCCAGATTATTTAGAAGCCGCCTTCTCACTATTTGAACA
ACGACTCGCTGAATTAGAAGAAATTTTGCAGAAAGGATGA

Domains

Predicted by InterproScan.

Peptidase family M3 (Peptidase_M3)

(203-583)

Oligopeptidase F (Peptidase_M3_N)

(114-182)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

51.684

99.165

0.513

Multiple sequence alignment