Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   ACF0HZ_RS08290 Genome accession   NZ_CP171619
Coordinates   1637556..1638926 (-) Length   456 a.a.
NCBI ID   WP_394457161.1    Uniprot ID   -
Organism   Leuconostoc suionicum strain VITA-PB2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1632556..1643926
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACF0HZ_RS08270 (ACF0HZ_08280) gltX 1633585..1635081 (-) 1497 WP_072612933.1 glutamate--tRNA ligase -
  ACF0HZ_RS08275 (ACF0HZ_08285) - 1635180..1635764 (-) 585 WP_072612932.1 TetR/AcrR family transcriptional regulator -
  ACF0HZ_RS08280 (ACF0HZ_08290) - 1635898..1637136 (+) 1239 WP_394455345.1 YhgE/Pip domain-containing protein -
  ACF0HZ_RS08285 (ACF0HZ_08295) - 1637179..1637553 (-) 375 WP_336197774.1 hypothetical protein -
  ACF0HZ_RS08290 (ACF0HZ_08300) radA 1637556..1638926 (-) 1371 WP_394457161.1 DNA repair protein RadA Machinery gene
  ACF0HZ_RS08295 (ACF0HZ_08305) - 1638975..1639514 (-) 540 WP_072612928.1 deoxyuridine 5'-triphosphate nucleotidohydrolase -
  ACF0HZ_RS08300 (ACF0HZ_08310) - 1639725..1640027 (+) 303 WP_257786599.1 GNAT family N-acetyltransferase -
  ACF0HZ_RS08305 (ACF0HZ_08315) rpiA 1640024..1640710 (+) 687 WP_072612926.1 ribose-5-phosphate isomerase RpiA -
  ACF0HZ_RS08310 (ACF0HZ_08320) - 1640828..1642258 (+) 1431 WP_072612925.1 aspartate ammonia-lyase -
  ACF0HZ_RS08315 (ACF0HZ_08325) - 1642284..1643222 (-) 939 WP_394455348.1 DUF1810 family protein -

Sequence

Protein


Download         Length: 456 a.a.        Molecular weight: 49226.48 Da        Isoelectric Point: 5.8843

>NTDB_id=1062364 ACF0HZ_RS08290 WP_394457161.1 1637556..1638926(-) (radA) [Leuconostoc suionicum strain VITA-PB2]
MAKVKTQFICSNCGFVSARYLGRCSNCGEWGTLVEEKIQPESNDRKSRVSLDGRNAKVEKINEITSEETPRVATKLKELN
RVLGGGVVPGSMVLIGGDPGIGKSTLLLQVSGQLAQEGRVLYVTGEESATQVKLRADRLGVGHDEFYLYPETDMTAVKKQ
IEELQPNFVVIDSVQTMQEPDVSSAVGSVSQIREVTADLLQIAKTNNISIFIVGHVTKDGAIAGPKILEHMVDTVLYFEG
DSNYKYRILRAVKNRFGATNELGIFEMRNGGLIEVANPSEIFLEERLAGATGSAIVVALEGSRPILVELQALVTPTVFGN
AQRTAAGLDRNRVSLIMAVLEKRANLLLQNQDAYLKAAGGVKLDEPAIDLAIAVALASSYHDKESRPSDVFVGEIGLTGE
VRSVADIEGRLKEAKKLGFKRAIVPKNNLNGVELPRGIQVIGVTTLSEALKIALGE

Nucleotide


Download         Length: 1371 bp        

>NTDB_id=1062364 ACF0HZ_RS08290 WP_394457161.1 1637556..1638926(-) (radA) [Leuconostoc suionicum strain VITA-PB2]
ATCGCTAAAGTAAAAACACAATTTATATGTTCCAACTGCGGTTTTGTTTCGGCGCGGTATTTGGGACGCTGCTCAAATTG
TGGTGAATGGGGCACGCTTGTTGAAGAAAAAATTCAACCAGAATCAAATGACCGTAAAAGTCGTGTGAGTCTAGATGGAC
GCAATGCAAAAGTTGAAAAAATAAACGAGATTACATCTGAAGAGACACCGCGCGTAGCAACTAAGCTTAAGGAATTAAAC
CGAGTTTTAGGTGGTGGTGTTGTCCCAGGTTCCATGGTTTTGATTGGTGGTGATCCTGGTATTGGTAAGTCAACATTACT
ACTTCAAGTATCTGGACAACTTGCTCAAGAAGGTCGGGTACTATATGTAACCGGCGAAGAGTCTGCCACACAAGTGAAAC
TGCGTGCCGATCGCTTGGGCGTTGGGCACGATGAGTTTTATTTATATCCGGAAACGGATATGACGGCCGTGAAAAAGCAG
ATTGAGGAATTACAACCGAATTTTGTTGTTATTGACTCGGTACAAACCATGCAAGAACCTGATGTTTCATCGGCTGTTGG
ATCAGTATCACAAATTCGAGAAGTGACAGCCGATCTGTTGCAAATCGCCAAGACTAATAATATTTCGATATTTATAGTAG
GGCATGTGACTAAAGATGGTGCCATAGCGGGGCCAAAAATTCTGGAGCATATGGTCGATACAGTATTGTACTTTGAAGGA
GATAGTAATTATAAGTATCGCATTCTGCGTGCGGTTAAAAATCGTTTTGGCGCAACGAATGAATTAGGTATTTTTGAAAT
GCGTAATGGCGGTTTGATAGAAGTGGCTAATCCCTCTGAGATTTTCTTAGAAGAACGCTTAGCTGGTGCCACTGGATCGG
CGATTGTGGTCGCGTTAGAAGGATCACGACCTATTTTGGTTGAATTACAAGCCCTAGTAACGCCGACCGTATTTGGTAAT
GCACAGCGTACAGCAGCAGGACTCGATAGAAATCGTGTGTCATTGATTATGGCAGTATTAGAAAAACGCGCTAACTTATT
ATTACAAAATCAAGATGCGTATTTAAAGGCAGCAGGTGGCGTGAAACTTGATGAACCAGCAATTGATTTAGCAATCGCTG
TTGCTCTGGCTAGTTCATATCATGATAAAGAATCAAGACCAAGTGATGTCTTTGTTGGCGAAATTGGTCTAACTGGTGAA
GTCCGTAGCGTAGCAGATATTGAAGGGCGATTAAAAGAAGCTAAAAAATTAGGCTTTAAGCGTGCTATTGTTCCTAAAAA
TAATTTAAACGGCGTTGAATTACCTCGTGGTATTCAAGTTATTGGAGTAACAACATTAAGTGAGGCGCTTAAAATTGCCT
TAGGAGAATGA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(362-428)

AAA domain (AAA_25)

(68-220)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus pneumoniae Rx1

66.962

98.904

0.662
  radA Streptococcus pneumoniae D39

66.962

98.904

0.662
  radA Streptococcus pneumoniae R6

66.962

98.904

0.662
  radA Streptococcus pneumoniae TIGR4

66.962

98.904

0.662
  radA Streptococcus mitis NCTC 12261

66.741

98.904

0.66
  radA Streptococcus mitis SK321

66.741

98.904

0.66
  radA Bacillus subtilis subsp. subtilis str. 168

61.707

100

0.618

Multiple sequence alignment