Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   ACF0HZ_RS06665 Genome accession   NZ_CP171619
Coordinates   1345043..1346836 (-) Length   597 a.a.
NCBI ID   WP_394455054.1    Uniprot ID   -
Organism   Leuconostoc suionicum strain VITA-PB2     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1340043..1351836
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACF0HZ_RS06640 (ACF0HZ_06645) pheS 1341416..1342465 (-) 1050 WP_072613142.1 phenylalanine--tRNA ligase subunit alpha -
  ACF0HZ_RS06645 (ACF0HZ_06650) - 1342769..1343137 (-) 369 WP_072613141.1 winged helix-turn-helix transcriptional regulator -
  ACF0HZ_RS06650 (ACF0HZ_06655) - 1343157..1344086 (-) 930 WP_072613140.1 phosphoglycerate dehydrogenase -
  ACF0HZ_RS06655 (ACF0HZ_06660) - 1344086..1344526 (-) 441 WP_394455051.1 nucleoside 2-deoxyribosyltransferase -
  ACF0HZ_RS06660 (ACF0HZ_06665) - 1344543..1344932 (-) 390 WP_081371156.1 cytidine deaminase -
  ACF0HZ_RS06665 (ACF0HZ_06670) pepF 1345043..1346836 (-) 1794 WP_394455054.1 oligoendopeptidase F Regulator
  ACF0HZ_RS06670 (ACF0HZ_06675) - 1346915..1347916 (-) 1002 WP_394455056.1 competence protein CoiA -
  ACF0HZ_RS06675 (ACF0HZ_06680) - 1347959..1349404 (-) 1446 WP_394455058.1 ABC transporter substrate-binding protein/permease -
  ACF0HZ_RS06680 (ACF0HZ_06685) - 1349471..1350223 (-) 753 WP_072613134.1 amino acid ABC transporter ATP-binding protein -
  ACF0HZ_RS06685 (ACF0HZ_06690) - 1350220..1351662 (-) 1443 WP_282872837.1 ABC transporter substrate-binding protein/permease -

Sequence

Protein


Download         Length: 597 a.a.        Molecular weight: 67813.52 Da        Isoelectric Point: 4.6448

>NTDB_id=1062361 ACF0HZ_RS06665 WP_394455054.1 1345043..1346836(-) (pepF) [Leuconostoc suionicum strain VITA-PB2]
MSEKQLLRNQVPENLTWDLSSIFPTDEAWEAAFDETRKSAQALSKYAGHVGDSADVLREALEADLAVERQFEKVYVYAHQ
IYDQDTTNQKYSAYNARVQGLYAELSANTAFFQPEVLALSNEKLDAYLATDGLKKYAHFFEVLKARKPHTLPAEQEALLA
GASDIFNASEQTFGALDNSDIVFGDVHTETGEIVPLTNGLYSLLLESKDRSLREEAFTTLYDSYIALQNTFASTLSSHVK
GHNFLAKTRHYDSARQAAVTANDIPESVFETLTKTVDANLPLLHRFVSLRKKILNVDDVHSYDLYVPLVDEINFEVTYEK
AKDIVLAALAPLGDDYIAIVQKAFNERWIDVVENKGKRTGAYSSGSYDTKPFILLNWQNNLNNVYTLAHEIGHSVHSYFT
RHNQEYHYGDYPIFLAEIASTTNEGLLTDYLLKTNDDPKFQAYVLNQYLDGFKGTVFRQTQFAEFEQWIHEQSAAGVALT
ADEMSTFYGSLNQKFYGSDLFPDEAIAYEWARIPHFYYNFYVYQYSTGEAAATTLAERILTQNGAEDYKNYLKAGNSDYA
LNVIKKAGVNMSQPDYLNEAFKVFEERLNEFEKIMLK

Nucleotide


Download         Length: 1794 bp        

>NTDB_id=1062361 ACF0HZ_RS06665 WP_394455054.1 1345043..1346836(-) (pepF) [Leuconostoc suionicum strain VITA-PB2]
ATGTCTGAAAAACAACTATTACGTAATCAAGTACCAGAAAATCTCACATGGGATCTATCCTCAATTTTTCCGACAGATGA
AGCTTGGGAAGCTGCTTTTGATGAAACACGAAAGTCTGCACAAGCATTAAGCAAGTATGCTGGACACGTCGGGGATTCTG
CTGATGTTTTGAGAGAAGCATTAGAAGCAGATTTGGCAGTAGAACGTCAATTCGAAAAAGTCTACGTATATGCTCATCAA
ATTTATGATCAAGATACAACTAACCAAAAGTACAGTGCGTATAATGCTCGTGTTCAAGGATTGTATGCTGAATTAAGTGC
GAATACAGCCTTCTTCCAGCCTGAAGTGTTAGCATTGTCAAACGAGAAGTTAGATGCATACTTAGCGACAGATGGTTTGA
AAAAATATGCACACTTCTTTGAAGTTTTAAAAGCTCGTAAACCGCATACGCTACCTGCAGAACAGGAAGCCTTACTAGCA
GGAGCAAGCGATATTTTTAATGCTTCTGAACAGACGTTTGGTGCATTGGATAATTCAGATATTGTTTTTGGTGATGTCCA
TACTGAAACAGGTGAAATTGTGCCATTGACAAATGGCCTCTATTCATTGTTGTTGGAGTCTAAAGATCGTTCATTGCGTG
AGGAAGCATTCACAACGCTTTATGATAGTTATATTGCTTTGCAAAATACATTTGCCTCAACTTTATCTTCACATGTCAAG
GGACATAACTTTTTAGCTAAAACCCGTCACTATGATTCAGCTCGTCAAGCTGCCGTAACAGCCAATGATATTCCTGAGTC
AGTTTTTGAAACATTAACCAAAACTGTTGATGCCAATCTGCCATTACTACACCGTTTTGTATCATTACGTAAAAAAATTC
TTAATGTTGACGATGTACATTCTTACGATTTATATGTACCACTTGTTGACGAAATTAATTTTGAAGTAACATATGAAAAG
GCAAAAGACATTGTTTTGGCGGCTTTGGCACCGTTAGGGGATGATTACATTGCTATTGTTCAAAAGGCTTTTAATGAACG
ATGGATTGATGTGGTTGAAAATAAGGGGAAACGTACTGGCGCTTATTCAAGTGGTTCTTATGACACAAAACCATTCATTT
TGCTCAATTGGCAGAATAATTTGAATAACGTTTATACGTTGGCTCATGAGATTGGACATTCGGTTCATTCATACTTTACA
CGTCATAATCAAGAGTATCATTATGGTGATTACCCAATATTCTTAGCCGAAATTGCTTCAACTACTAATGAGGGATTATT
AACGGATTATTTGCTAAAGACAAATGATGATCCCAAGTTTCAGGCTTACGTATTGAACCAGTATCTAGATGGATTCAAAG
GAACAGTTTTCCGCCAAACTCAATTTGCTGAGTTTGAGCAATGGATTCATGAACAAAGTGCGGCTGGAGTGGCTTTGACA
GCTGATGAAATGAGTACATTCTATGGATCATTGAATCAAAAGTTTTATGGATCGGACTTATTTCCAGATGAAGCTATCGC
TTATGAATGGGCACGTATTCCACATTTTTATTACAATTTCTATGTTTATCAATATTCTACTGGCGAAGCTGCTGCCACAA
CTTTGGCAGAACGCATACTAACACAAAATGGTGCTGAGGATTATAAGAACTATCTGAAAGCAGGTAATTCAGATTATGCT
TTGAATGTGATAAAAAAAGCTGGCGTTAACATGAGTCAACCGGACTATTTAAATGAAGCTTTCAAAGTGTTTGAAGAGCG
ATTAAATGAGTTTGAAAAAATCATGTTAAAGTAA

Domains

Predicted by InterproScan.

Peptidase family M3 (Peptidase_M3)

(204-582)

Oligopeptidase F (Peptidase_M3_N)

(115-183)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

52.445

99.33

0.521

Multiple sequence alignment